Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A09
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.0  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    26   3.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   4.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.1  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.1  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 193  IENCTQLVTTGHVSQIVWRRLRLCRPSQVWH 101
            +++C ++++  H    +W  LRL  P    H
Sbjct: 1305 VDDCNEVISDVHFDDFIWEVLRLVLPGVTVH 1335


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 133 LRLCRPSQVWHASPAPRV-SLWGLCARPAHKHALTHELLSSRF 8
           L L  P  +WH S +P V S + L   P   H    ++  + F
Sbjct: 17  LSLRSPIPIWHVSASPEVGSKYNLPTVPTTSHVSYRQIAKANF 59


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 155 ITDSVA--AFAPVSSITGM-ACKPRTSSVALGTLRSPCTQARFNSRTPLVT 12
           IT S A     P++S + + +  P TSS AL T  S  + +  NS TP+ +
Sbjct: 504 ITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITS 554



 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 128  PVSSITGM-ACKPRTSSVALGTLRSPCTQARFNSRTPLVT 12
            P++S T +    P TSS AL T  S  + +  NS TP+ +
Sbjct: 2351 PITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITS 2390



 Score = 25.4 bits (53), Expect = 4.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 155  ITDSVA--AFAPVSSITGM-ACKPRTSSVALGTLRSPCTQARFNSRTPLVT 12
            IT S A     P++S + + +  P TSS AL T  S  + +  NS TP+ +
Sbjct: 2616 ITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITS 2666



 Score = 25.4 bits (53), Expect = 4.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 155  ITDSVA--AFAPVSSITGM-ACKPRTSSVALGTLRSPCTQARFNSRTPLVT 12
            IT S A     P++S + + +  P TSS AL T  S  + +  NS TP+ +
Sbjct: 2844 ITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITS 2894



 Score = 25.4 bits (53), Expect = 4.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 155  ITDSVA--AFAPVSSITGM-ACKPRTSSVALGTLRSPCTQARFNSRTPLVT 12
            IT S A     P++S + + +  P TSS AL T  S  + +  NS TP+ +
Sbjct: 2940 ITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITS 2990



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 155  ITDSVA--AFAPVSSITGM-ACKPRTSSVALGTLRSPCTQARFNSRTPLVT 12
            IT S A     P++S + + +  P TSS AL T  S  + +  NS TP+ +
Sbjct: 1272 ITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITS 1322


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 394 LVLSRNFKYCF*CIKELEINLW 459
           L LS  F+ CF  +K LE  +W
Sbjct: 326 LFLSSYFENCFKGVKSLEFKIW 347


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  SVLVCRASAESPERHSRCGACMPYL 112
           SV+    S+ S  +H RC ACM Y+
Sbjct: 260 SVIWHTFSSLSNYKHMRCAACMDYV 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,867
Number of Sequences: 5004
Number of extensions: 36935
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)