Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A09
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0156 - 18698375-18698596                                         29   2.6  
12_01_0875 - 8395838-8395852,8396080-8396505                           28   3.5  
07_01_0230 - 1679165-1681108                                           27   6.1  
01_06_0584 - 30407012-30408531,30408625-30408955                       27   6.1  
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472...    27   8.1  
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874     27   8.1  

>01_05_0156 - 18698375-18698596
          Length = 73

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 7  RNVTRGVRELKRACVQGERRVP 72
          R  TRG R L+R C QGE   P
Sbjct: 4  RGDTRGARGLRRRCEQGEEEAP 25


>12_01_0875 - 8395838-8395852,8396080-8396505
          Length = 146

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 1   RIRNVTRGVRELKRACVQGERRVPRATLEVRGLHAIPVMDDTGANAATL 147
           +IR     VR+ K+ CVQ  RRV R +  +  L    ++    A AA L
Sbjct: 17  KIRQAVETVRQNKQECVQIRRRVVRVSSILSQLEDTVIIRSNPAMAAAL 65


>07_01_0230 - 1679165-1681108
          Length = 647

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 223 SKTLKAVSQHIENCTQLVTTGHVSQIVWRRLRLCRPSQVWHASPAP 86
           SKTLK V   +     L+    V+ +VWRR R     + W     P
Sbjct: 266 SKTLKIVLPIVITTVILLVGAAVTALVWRRKRYAELYEDWEVEFGP 311


>01_06_0584 - 30407012-30408531,30408625-30408955
          Length = 616

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 158 CITDSVAAFAPVSSITGMACKPRTSSVALGTL 63
           C T   AA   +  +TGMA  P   SVAL  L
Sbjct: 150 CGTGCTAAIKRLQEVTGMAVPPTLRSVALDVL 181


>07_03_0378 +
           17446311-17446514,17446814-17446927,17447124-17447242,
           17447595-17447641,17447720-17447820,17450769-17450840,
           17451290-17451403,17451495-17451500,17451501-17451611
          Length = 295

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 116 ITGMACKPRTSSVALGTLRSPCTQARFNSRTPLVTFR 6
           +T +    +T+  ++G+   PCT+   N  TPL +++
Sbjct: 139 VTSVKDLSKTTDWSMGSALCPCTEPEHNVSTPLTSWK 175


>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
          Length = 488

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 DTIPVDTTRYSYIRFASFDCCMF 316
           D +P   TR+S +R ASF  C F
Sbjct: 172 DPLPPTATRFSCLRVASFGFCSF 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,490,355
Number of Sequences: 37544
Number of extensions: 248494
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)