Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A09
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_45163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   27   6.3  
SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)                   27   8.3  

>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 488  IKSQISF-ANSHKLISNSLIH*KQYLKLRLKTKQS*NSYNDNNYCIL-TYKKNL 333
            +++  SF +N H+L+     H KQ+LKLR K +   NS  D N C+  T+ K L
Sbjct: 2604 VQADTSFQSNKHELVDYMTAHFKQFLKLRNKVQDVGNSRQDINNCLTDTFDKKL 2657


>SB_45163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 78  DTRGAGLACHTCDGRHRRKRR 140
           D   A +ACHTCD  H R +R
Sbjct: 219 DVAMANVACHTCDVIHARGKR 239


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 397 VLSRNFKYCF*CIKELEINLWLFAKD 474
           VL+  FKY +  I    +N+W F +D
Sbjct: 789 VLNSEFKYLYTAITRARVNVWFFDED 814


>SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)
          Length = 141

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 202 SQHIENCTQLVTTGHVSQIVWRRLR 128
           S   +N    +TTGH +QIVWR  R
Sbjct: 100 SYQYDNPGFALTTGHFTQIVWRGTR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,629
Number of Sequences: 59808
Number of extensions: 303284
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)