Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A09
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005211-1|AAH05211.1|  170|Homo sapiens zinc finger, CCHC domai...    31   1.6  
AK000101-1|BAA90946.1|  170|Homo sapiens protein ( Homo sapiens ...    31   1.6  
DQ120624-1|ABB92410.1|  513|Homo sapiens GMCL2 protein.                29   8.6  

>BC005211-1|AAH05211.1|  170|Homo sapiens zinc finger, CCHC domain
           containing 10 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 44  LVCRASAESPERHSRCGACMPYL*WTTQAQTPPHYL*YMPGSDELSTIFNVLTNRL 211
           L+ R  AE+ ++H RC  C+ +  WT +      YL     + EL        NRL
Sbjct: 8   LIARRQAEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRL 63


>AK000101-1|BAA90946.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20094 fis, clone COL04320. ).
          Length = 170

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 44  LVCRASAESPERHSRCGACMPYL*WTTQAQTPPHYL*YMPGSDELSTIFNVLTNRL 211
           L+ R  AE+ ++H RC  C+ +  WT +      YL     + EL        NRL
Sbjct: 8   LIARRQAEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRL 63


>DQ120624-1|ABB92410.1|  513|Homo sapiens GMCL2 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 54  GRAQSPQSDTRGAGLACHTCDGRHRRKRRHTICDTC 161
           G A+ P +    AG     C G H+RKR    C  C
Sbjct: 27  GSARRPDTGDDAAGYGFCYCPGSHKRKRSSGACRYC 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,320,741
Number of Sequences: 237096
Number of extensions: 1345824
Number of successful extensions: 2559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2559
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)