Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A09
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine n...    29   1.4  
AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho ...    29   1.4  
AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-...    29   1.4  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +2

Query: 245 LDTIPVDTTRY-----SYIRFASFDCCMFVIIIHQGSSYMSVCNNCCHCRNFKTV*F*AV 409
           L T+ +D   +      Y+ FA ++CC + +     S     C N C+CR    V F  V
Sbjct: 97  LQTLEIDVDEFYPPTDKYLVFAHWECCAYWVSKRMSSQEHHTCPN-CNCRVKAHVAFSLV 155

Query: 410 TSNIAF 427
           T    F
Sbjct: 156 TDAFEF 161


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +2

Query: 245 LDTIPVDTTRY-----SYIRFASFDCCMFVIIIHQGSSYMSVCNNCCHCRNFKTV*F*AV 409
           L T+ +D   +      Y+ FA ++CC + +     S     C N C+CR    V F  V
Sbjct: 11  LQTLEIDVDEFYPPTDKYLVFAHWECCAYWVSKRMSSQEHHTCPN-CNCRVKAHVAFSLV 69

Query: 410 TSNIAF 427
           T    F
Sbjct: 70  TDAFEF 75


>Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical
           protein C33D9.1b protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 102 CHTCDGRHRRK-RRHTICDTC 161
           C  C GR R + ++H ICDTC
Sbjct: 667 CKKCFGRRRNESKKHRICDTC 687


>Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical
           protein C33D9.1a protein.
          Length = 844

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 102 CHTCDGRHRRK-RRHTICDTC 161
           C  C GR R + ++H ICDTC
Sbjct: 667 CKKCFGRRRNESKKHRICDTC 687


>AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine
           nucleotide exchangefactor FGD-1 protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 102 CHTCDGRHRRK-RRHTICDTC 161
           C  C GR R + ++H ICDTC
Sbjct: 667 CKKCFGRRRNESKKHRICDTC 687


>AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho
           guanine nucleotideexchange factor FGD-1 protein.
          Length = 844

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 102 CHTCDGRHRRK-RRHTICDTC 161
           C  C GR R + ++H ICDTC
Sbjct: 667 CKKCFGRRRNESKKHRICDTC 687


>AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-GTP
           exchange factor protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 102 CHTCDGRHRRK-RRHTICDTC 161
           C  C GR R + ++H ICDTC
Sbjct: 667 CKKCFGRRRNESKKHRICDTC 687


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 221 QNTQGG*SAH*KLYSTRHYRACITDSVAAFAPVSSITGMACKPRTSSVALGTLRSPC 51
           QNTQ G ++  ++ ++     C T+S  A   + S    AC P T+S    T  +PC
Sbjct: 72  QNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICS--NGACCPNTNSNTCSTTGTPC 126


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 425 KQYLKLRLKTKQS*NSYNDNNYCILTYKKNLDVL**QTCSSQKK--QIE-CMNI**YLQV 255
           K+Y KL++K  +S N   D N  I  + +  D +  +   ++KK  Q+E C++   Y Q+
Sbjct: 35  KKYEKLKIKYSESLNQITDKNQLIRDWTRKYDEMELRNMENEKKVQQLEQCLSTHDYCQM 94


>Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical
           protein H13N06.7 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 317 VIIIHQGSSYMSVCNNCCHCRN 382
           ++ I +GSS   +C N C C N
Sbjct: 84  LLFIRRGSSLFKICKNYCSCTN 105


>Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical
           protein K02E2.3 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 214 VFWTLETLTFVRYDTCRYY*IFIHSICFF*LLHVCYHNTSRFFLYVSMQ 360
           +FW L  +T V  +T      F  +ICF  ++ +   +   F+++ +M+
Sbjct: 216 IFWYLFHITSVSKNTAHLQKQFFFAICFHVIIPLIVLSIPSFYIFFAMR 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,721
Number of Sequences: 27780
Number of extensions: 219013
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)