BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0001_A09 (489 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g58880.1 68416.m06562 F-box family protein contains F-box dom... 28 2.9 At3g42190.1 68416.m04340 hypothetical protein 28 2.9 At2g27900.1 68415.m03382 expressed protein 28 3.9 At4g01240.1 68417.m00163 hypothetical protein 27 5.1 At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 27 6.8 >At3g58880.1 68416.m06562 F-box family protein contains F-box domain Pfam:PF00646 Length = 454 Score = 28.3 bits (60), Expect = 2.9 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = +1 Query: 367 LSL*EFQDCL---VLSRNFKYCF*CIKELEI 450 L + EFQ L + ++F YCF C+KE+EI Sbjct: 387 LEIREFQGTLREMEMIKHFYYCFLCLKEMEI 417 >At3g42190.1 68416.m04340 hypothetical protein Length = 695 Score = 28.3 bits (60), Expect = 2.9 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -2 Query: 125 VSSITGMACKPRTSSVALGTLRSPCTQARFNSR 27 VS+ + C +LR PC RFNSR Sbjct: 165 VSNSEDIGCNDGNDEFGFDSLRRPCPNVRFNSR 197 >At2g27900.1 68415.m03382 expressed protein Length = 1124 Score = 27.9 bits (59), Expect = 3.9 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -2 Query: 155 ITDSVAAFAPVSSITGMACKPRTSSVALGTLRSPCT 48 ++ S+A V S+TG +C P+ + G++ PCT Sbjct: 431 VSPSLATTQMVDSVTGSSCDPQDGGLLPGSI-PPCT 465 >At4g01240.1 68417.m00163 hypothetical protein Length = 659 Score = 27.5 bits (58), Expect = 5.1 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = -2 Query: 134 FAPVSSITGMACKPRTSSVALGTLRSPCTQARFNSRTPL 18 FAPV S+ KP S +L L S T A+FN TPL Sbjct: 189 FAPVESLE--LAKPCFPSPSLAFLISVATLAKFNYITPL 225 >At3g45170.1 68416.m04875 zinc finger (GATA type) family protein contains GATA-type zinc finger domain, INTERPRO:IPR000679 Length = 204 Score = 27.1 bits (57), Expect = 6.8 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = +3 Query: 36 KACLCAGRAQSP--QSDTRGAGLACHTCDGRHRRKR 137 K+C G ++P + RGAG C+ C R+R R Sbjct: 115 KSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGR 150 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,019,111 Number of Sequences: 28952 Number of extensions: 193315 Number of successful extensions: 467 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 467 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 848837888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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