Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A07
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   1.1  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   3.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.4  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   4.5  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    25   6.0  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   6.0  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 215 FYELDWFTHKITPGQNKIVRNSNE--FSLFKEDSLPLTDLMKLLD 343
           F  LDWFT+  +  QN+++R S +  F    +  L L   +KLL+
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLE 698


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = -1

Query: 348 PSSNNFMRSVNGKESSLKSENSFELRTILFCPGVILCVNQSSS*NLCQFSSNVMGNPLSL 169
           PS + F   +   + S  S N F  + IL  P   L    SS      F +N    P+S+
Sbjct: 249 PSYSIFPGQIVSVKGSNPSGNMFIAKEILPIPP--LPFPSSSKQEHATFVANTNNQPISI 306

Query: 168 YLGPKKILITASVAISDLTSMVT 100
           Y+      +   ++ S L SM++
Sbjct: 307 YIASGPWSLRDDLSFSPLKSMIS 329


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 143 IKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKIT 250
           + I L P  ND  +  T    WHKF++  WF   +T
Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 357 GTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGV 247
           G FPS  +    + GK + +KS   F+L+ +L C GV
Sbjct: 131 GKFPSPVSHADDLYGKITEVKSTIKFQLKKVL-CLGV 166


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 396 LFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFE 277
           LFG  +KP+    GT  +SNN     +G   +  +EN  E
Sbjct: 160 LFGGGNKPAAAVTGTSSNSNNASAKSDGPTITELNENETE 199


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 210 CQFSSNVMGNPLSLYLGPKKILITASVAISDLTSMV-TLKGLWLSRG 73
           CQF   V+G    L+    K LI+ S A   L+++  + KG  LS G
Sbjct: 113 CQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMG 159


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 162 LSTTIMDSPSHWKKTGINSTNWIG 233
           LS   +   S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 29  KEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGFPI 190
           + I+ SYP+ F  R P+  H P +  +D  +  A + V    L P+ N    P+
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLLDASA--ALNPVQNPLLMPQQNHEHSPL 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,333
Number of Sequences: 5004
Number of extensions: 52458
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)