Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A07
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0106 + 788967-789555,790139-790162,790339-791411                 31   0.87 
09_06_0289 - 22053561-22055666,22055745-22055771                       29   2.7  
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    29   3.5  
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202...    28   4.6  
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    28   4.6  
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437...    28   4.6  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    28   4.6  
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   6.1  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    27   8.1  

>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 74  PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKI 247
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 248 TPGQNKIV 271
             GQN ++
Sbjct: 491 FTGQNLLI 498


>09_06_0289 - 22053561-22055666,22055745-22055771
          Length = 710

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 550 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 458
           VRW  EW  + LV+ + GL+W  ++A   ++
Sbjct: 40  VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70


>03_05_0325 +
           23135816-23135894,23136161-23136333,23136440-23136613,
           23136881-23137004,23137090-23137190,23137337-23137423,
           23137801-23137896,23138209-23138329,23138475-23138603,
           23139458-23139549,23139660-23139771,23140189-23140541,
           23140670-23140899,23141179-23141278,23143357-23143411,
           23143548-23145496,23145587-23145745,23146514-23146685,
           23146758-23147056,23147246-23147521
          Length = 1626

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 399 NLFGMHSKPSDIYNGTFPSSNNFM-RSVNGKESSLKSENSFELRTILFCPGVILCVNQSS 223
           NLF    + SD YN    SSN  M   V GKE    S +S    T+ F  G +   N ++
Sbjct: 507 NLFVPEGRSSDNYNNDAASSNPLMCDGVGGKELDDDSSSSKGTHTVKF-DGQLTSSNATT 565

Query: 222 S 220
           S
Sbjct: 566 S 566


>11_04_0094 +
           13418604-13418680,13419331-13419400,13420078-13420236,
           13420334-13420445,13420530-13420649,13422249-13422406,
           13422987-13423217,13424621-13424713,13425088-13425227,
           13426331-13426401,13427554-13427637,13427752-13427846
          Length = 469

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 498 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 361
           +S+   SW L +    K KNW NG   ++ +G    FG  S P DI+
Sbjct: 35  SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80


>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 287 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEGFECM 388
           F+ FKE+  PLT +   L  G  P  + +GF C+
Sbjct: 346 FNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCI 379


>04_01_0332 +
           4378111-4378329,4378862-4378997,4379113-4379165,
           4379286-4379394,4379467-4379603,4379698-4379894,
           4379979-4380128,4380233-4380293,4380380-4380500,
           4380901-4380991,4381116-4381209,4381446-4381541,
           4382176-4382316,4382592-4382642,4383093-4383161,
           4384072-4384142,4384244-4384336,4384820-4384910,
           4386164-4386235,4387226-4387351,4387537-4387593,
           4387926-4388000,4388570-4388658,4388814-4388891,
           4389308-4389446,4389868-4389977,4390151-4390250,
           4390548-4390655
          Length = 977

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -1

Query: 498 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYNGT 352
           ++NG R+WL+D N  T K  +W+      P      +I+++ +H +    ++ T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 32  EIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGFP 187
           ++KT    ++ ++ PRL +   S+  DV + +  D  +K +    Y  NG P
Sbjct: 90  DLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGEDIKVKPWAHTVYGKNGIP 141


>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 142 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 41
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 224 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKL 337
           +D F   +T    KI RNS +FS    DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,379
Number of Sequences: 37544
Number of extensions: 304013
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)