Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A07
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17490.1 68416.m02234 F-box family protein similar to F-box p... 36 0.019
At3g17480.1 68416.m02233 F-box family protein contains F-box dom... 33 0.18
At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr... 29 2.2
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put... 28 3.9
At2g23200.1 68415.m02771 protein kinase family protein contains ... 28 3.9
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 28 3.9
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont... 28 5.1
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS... 27 6.8
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS... 27 6.8
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 9.0
At2g02500.1 68415.m00189 expressed protein contains Pfam profile... 27 9.0
At1g71940.1 68414.m08316 expressed protein 27 9.0
>At3g17490.1 68416.m02234 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain and
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 388
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -1
Query: 483 RSWLLDSNGYTKTKNWNGYPPSVPLG-NINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKE 307
+ W N +K P LG + F ++S S+++ ++ + + GK
Sbjct: 31 KQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIYSMSSNLHGLLHNNNIDLLMEFKGKL 90
Query: 306 SSLKSENSFELRTILFCPGVILC 238
SSL N FE+ I C G+ILC
Sbjct: 91 SSLNDLNDFEISQIYPCDGLILC 113
>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
Pfam:PF00646
Length = 373
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 176 NGFPITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 307
N T+ +W KF +D +TH+ G + N+ ++F ED
Sbjct: 286 NDITDTIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329
>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 369
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/59 (30%), Positives = 21/59 (35%)
Frame = -3
Query: 532 WIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQR 356
W V N WC I R+ IY NK W+ T S W+ FR R
Sbjct: 247 WKVTEAVFN---FSWCVIEKVRY--IYYNKNCWWLDTKSKDWRKIKGLDFLNKFRETDR 300
>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
putative / extra sporogenous cells (ESP) identical to
extra sporogenous cells [Arabidopsis thaliana]
gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 1192
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 465 SNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFP 346
SN Y +++G PS +GNI+L + PS +NG P
Sbjct: 189 SNLYMGLNSFSGQIPS-EIGNISLLKNFAAPSCFFNGPLP 227
>At2g23200.1 68415.m02771 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 834
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 119 SDIATDAVIKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKITPGQNKIVRN---SNEF 289
S +A I++F P +D P ++N H Y L+ KITP + + R ++
Sbjct: 177 SSLALINAIEVFSAP--DDLEIPSASDKNLHTIYRLNVGGEKITPDNDTLGRTWLPDDDD 234
Query: 290 SLFKEDS 310
L+++DS
Sbjct: 235 FLYRKDS 241
>At1g33610.1 68414.m04160 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 907
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 435 NGYPPSVPLGNINLFGMHSKP--SDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTI 265
N Y VP+ NL + + ++ G FP ++S+NG ES S N F L+TI
Sbjct: 710 NKYSGVVPMSFTNLINITNLDLSHNLLTGPFP----VLKSINGIESLDLSYNKFHLKTI 764
>At5g01160.1 68418.m00020 e-cadherin binding protein-related
contains weak similarity to E-cadherin binding protein
E7 [Mus musculus GP|9622093|gb|AAF89617
Length = 360
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 462 NGYTKTKNWNGYPPSVPLGNINLFGMHSKPS 370
+G ++ + GYPP P+ N+N G + PS
Sbjct: 294 SGGSEQSSLLGYPPPSPMTNLNFQGSYPPPS 324
>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 438
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 155 LGPKYNDNGFPITLEENWHKFY 220
+ P+YND FP + WHK +
Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358
>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 155 LGPKYNDNGFPITLEENWHKFY 220
+ P+YND FP + WHK +
Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 20 LTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGFPITLE 199
L KK K S+ + R++ P+S +I + D ++ +F G D GF ++LE
Sbjct: 10 LMKKRNKRSHKRKREEDFERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGF-LSLE 68
Query: 200 E 202
E
Sbjct: 69 E 69
>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
PF01128 uncharacterized protein family UPF0007;
identical to GP:12697583 2-C-methyl-D-erythritol
4-phosphate cytidyltransferase {Arabidopsis thaliana};
identical to cDNA
4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
(ISPD) GI:7385140
Length = 302
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 287 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEG 376
F L K + L +TD + +++ K P+Y+S+G
Sbjct: 249 FELVKSEGLEVTDDVSIVEYLKHPVYVSQG 278
>At1g71940.1 68414.m08316 expressed protein
Length = 272
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 252 GVILCV-NQSSS*NLCQFSSNVMGNPLSLYLGPKKI 148
GV+L V N ++ C F S ++G PL +L P K+
Sbjct: 131 GVVLVVFNATAGATSCFFLSKLIGRPLITWLWPDKL 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,101
Number of Sequences: 28952
Number of extensions: 266873
Number of successful extensions: 880
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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