Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A06
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      34   0.014
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    29   0.52 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.68 
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    26   3.6  
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    26   4.8  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    26   4.8  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   4.8  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   6.3  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   8.4  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 455 PTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTVIISDTG 583
           P+ + +  LA KY + I+    E++EK ++I++N+ + I++ G
Sbjct: 68  PSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYITENG 110


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 365 VSKNYGTCPSLSARGRNNPGANSLNLPRKDPTT 463
           V +  G CP  +    N PG  SLN+PR  PTT
Sbjct: 304 VHETEGYCPHKTG---NRPGFPSLNIPRTRPTT 333


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 497  MVIVSSILERDEKHADIL 550
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 117 VFPSIINPVDSSRSLPLKLLLTIASRLWVSWSM 19
           VF SI   V SS   PL  ++ +ASRL++ W +
Sbjct: 60  VFHSIFGLVSSS---PLTTIIQVASRLYLVWGV 89


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 579 VSLIITVVFQRMSACFSSLSRIEDTITMAYLTASSR 472
           V  I++  FQR+    SSL R ED++   Y    +R
Sbjct: 67  VKPILSKAFQRLEDSISSLQRQEDSLKTKYELQEAR 102


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 467 FLRELAVKYAMVIVSSILERDEKHADILWNTTV---IISDTGKRNWK 598
           +LR+L    A +    I+ RD K  +  WN      +I D G   W+
Sbjct: 162 YLRDLLKGLAHIDAKGIIHRDIKPGNFAWNPYTQRGVILDFGLAQWQ 208


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 283 INEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNM 387
           ++  K   +D+VK I  +  +   NI C  E WNM
Sbjct: 292 LDSSKHPRWDRVKNIDPIKFEFADNIKCALEAWNM 326


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 367 FQELWNMPFAFCTREK---QPWCEFAESAEEGPDYTLSP*AGCQIRHGNRVFYPREGR 531
           ++++ N P     + K   Q W EF+E   + PD+T +       R G + F  + G+
Sbjct: 198 YEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEKVFRAGIKRFSDQAGK 255


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 484 SQLTEKACSRVLPRQIQRIRTRVVSPACRKRRACSIVLGN 365
           +++TEK    V    I+ +   + SP    +RA S+ LGN
Sbjct: 72  AEITEKDVREVDRETIEPVLFLLQSPDAEIQRAASVALGN 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,101
Number of Sequences: 5004
Number of extensions: 55132
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)