Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A06
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   110   9e-25
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155...    29   2.1  
03_05_0812 + 27890030-27890219,27890618-27890916,27891603-278918...    29   3.7  
07_03_0280 + 16219427-16220236,16220660-16220908                       28   4.9  
09_06_0037 + 20389976-20391016,20391103-20391723                       27   8.6  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  110 bits (264), Expect = 9e-25
 Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
 Frame = +1

Query: 193 FPAKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQ 372
           F A KE  R PR+++VG+IQ+SIAIPT     +QKKAI +KVK +ID AG  GVNI+C Q
Sbjct: 83  FDADKEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQ 142

Query: 373 -----ELWNMPFAFCTREKQPWCEFAESAE 447
                E W MPFAFCTREK+ WCEFAE  +
Sbjct: 143 VSQLSEAWTMPFAFCTREKR-WCEFAEPVD 171



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +2

Query: 443 PRKDPTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTVIISDTG 583
           P    +T+FL++LA KY MVIVS ILERD  H +I+WNT V+I + G
Sbjct: 169 PVDGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVWNTAVVIGNHG 215


>03_05_1068 +
           30114682-30114868,30114947-30115239,30115354-30115591,
           30115977-30117871
          Length = 870

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 389 PSLSARGRNNPGANSLNLPRKDPTTRFLRELAVKYAMVIVSSILERDEKHA 541
           PS+S R    PG    +   +DP   F+R +  +   ++  S+LE   KH+
Sbjct: 734 PSVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHS 784


>03_05_0812 +
           27890030-27890219,27890618-27890916,27891603-27891840,
           27892098-27892433,27892522-27892607,27892703-27892810,
           27892918-27893225,27893304-27893567,27893660-27894431
          Length = 866

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 389 PSLSARGRNNPGANSLNLPRKDPTTRFLRELAVKYAMVIVSSILERDEKHA 541
           P++S R    PG  +     +DP   F+R +  +   +I  S++E   KH+
Sbjct: 730 PTVSRRRMPEPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHS 780


>07_03_0280 + 16219427-16220236,16220660-16220908
          Length = 352

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 274 DRPINEQKKAIFDKVKKIIDVAGQEG 351
           D  IN   + +FDK+  ++DVAG  G
Sbjct: 190 DMAINGSGRQVFDKITSMVDVAGGTG 215


>09_06_0037 + 20389976-20391016,20391103-20391723
          Length = 553

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 490 FDSQLTEKACSRVLPRQIQRIRTRVV 413
           FD Q T   CSR++PR + R  TR++
Sbjct: 285 FDLQSTRARCSRLVPR-VNRFVTRII 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,569
Number of Sequences: 37544
Number of extensions: 352682
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)