Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A06
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 288 VNWTVGWYRDRVLNNTNFND 229
           VNWT+G     V+N T   D
Sbjct: 520 VNWTIGQLEAEVINCTTGKD 539


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 493 VFDSQLTEKACSR 455
           VFDSQLT KA S+
Sbjct: 300 VFDSQLTVKAVSK 312


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 523 LEDRRHDYHGVFDSQLTEKACSRVLPRQIQR 431
           L +R HD+         E+ CSR   R+ ++
Sbjct: 217 LRNRTHDFQHTSSRYSRERRCSRDRNREYRK 247


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 336 DIDYLFYLIENCFFLLVNWTVGWY 265
           D++Y  +  + CF    +WT   Y
Sbjct: 148 DVEYFPFDEQTCFMKFGSWTYDGY 171


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 523 LEDRRHDYHGVFDSQLTEKACSR 455
           L  R HD+         E++CSR
Sbjct: 217 LRSRTHDFQHTSSRYSRERSCSR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,718
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)