Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A05
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 3.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 3.1
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 5.4
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.5
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 25 9.5
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 25 9.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 9.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 9.5
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 9.5
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 9.5
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 278 DVRIGGLTI---IYITPKLVDFQQDSLNRRLICREALASSRLMV 156
D R GL + + ITP LV Q SL R IC++ S L +
Sbjct: 1062 DSRTVGLVVNAFLAITPLLVSEQAHSLVREFICQQVFQSVILAI 1105
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 201 PVKGILLKIDKFWGDVNYS 257
P++ ++LKI WG+ NY+
Sbjct: 458 PIQNVILKIKSNWGNPNYT 476
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 285 SKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSE 404
SK F+E NP T ++ G +TL + T ++ ++ +
Sbjct: 152 SKDFTETNPPIITSSDCEGAGEVFTLTPQETHKNKSFERD 191
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.5
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +3
Query: 219 LKIDKFWGDVNYS-----EATNPYISLSKTFSEMNP---DFFTMANKIYVGNKYTLDEKF 374
+++D + NYS N I L +T E++ DF + YV + +L +
Sbjct: 296 MEVDGLNNNSNYSATPRTRVVNGQIVLDETSLEVDRHERDFVPAEEREYV-EENSLSRRV 354
Query: 375 TSSSRQYQSEVETIDFSDTKKAADIINQWANE 470
TS++ + + E + DT+K ++QW +
Sbjct: 355 TSATWGNRQKPEKWNAMDTEKFYKALSQWGTD 386
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 195 DL*RSISIITPNGEDTTFLSFPDVYASLRSF 103
D R ++ +T G+ LS D ASLRSF
Sbjct: 154 DTFREVTFLTELGQQEDLLSSRDGEASLRSF 184
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 322 VKKSGFISEKV-LLRLMYGLVASL*FTS 242
V KS S KV +L L YGLVAS+ F S
Sbjct: 205 VGKSSLFSYKVRILLLDYGLVASIIFFS 232
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 71 LSCCTRGQRNRML-ARCRP 18
LSCCT G N +L ++C P
Sbjct: 1236 LSCCTEGSINALLNSKCLP 1254
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 9.5
Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Frame = +3
Query: 243 DVNYSEATNPYISLSKT-FSEMNPDFFTMANKIYVGNKYTLD----EKFTSSSRQYQSEV 407
++NY + + ++K ++++NP+ +T + + ++Y L E SS++ + E
Sbjct: 114 ELNYKSLASLALEINKNVYTDLNPELYT-GSTVSQSSEYVLVIELLETQERSSKRRRREG 172
Query: 408 ET---------IDFSDTKKAADIINQWANEKTRGHIK 491
T +DF++ KKA ++ NQ + + +IK
Sbjct: 173 PTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIK 209
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 32 RAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKS 196
+ FY +E N T L + + Y KDK++ P ++LM + KS
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKS 212
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 144 FLSFPDVYASLR-SFIEVLSMASPKAVLLYSWSKK*NARTLQTAITANK 1
+ SFP + AS+ +F+ ++ + P V +Y+W+ LQ + +NK
Sbjct: 156 YSSFPLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVLQNSNLSNK 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,579
Number of Sequences: 5004
Number of extensions: 45469
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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