Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A05
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0750 - 6315126-6315896,6316371-6316784 32 0.25
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 29 3.1
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 28 4.1
05_07_0209 + 28420008-28421510 28 4.1
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840... 28 4.1
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544... 28 5.5
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852... 27 7.2
06_03_0799 - 24703634-24703766,24703937-24704123,24704468-247046... 27 7.2
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 27 7.2
01_04_0065 + 15627559-15627987,15630933-15631176,15632198-15632703 27 9.6
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 327 ANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDFSDTKK-AADIINQWANEKTRGHIKSPI 500
A ++ +L +F + Y S + DF + + A D IN W + T+G + + +
Sbjct: 103 AGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLL 162
Query: 501 SDDTIDPNAAAAL 539
TID N L
Sbjct: 163 PAGTIDQNTGLVL 175
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 372 FTSSSRQYQSEVETIDFSDTKKA-ADIINQWANEKTRGHIKSPISDDTID-PNAA 530
+ ++ E E + S+T++ ADI QWA R +K SD+T+ PN A
Sbjct: 182 YAGKQAEWDKEDEAVAESNTQQVLADIPVQWARNWARARVKKN-SDETLSFPNPA 235
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 462 ANEKTRGHIKSPISDDTIDPNAAAA 536
A + RG KSP DD I+PNAAAA
Sbjct: 241 AAAQARGS-KSPEDDDNINPNAAAA 264
>05_07_0209 + 28420008-28421510
Length = 500
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 297 SEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETID 419
+ MNP FT+ + NK +L E+FT+S Y S ++++
Sbjct: 310 ASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFDSLE 350
>03_02_0872 -
11983151-11983432,11983488-11983598,11983744-11984007,
11984038-11984163,11984257-11984481,11984757-11985311,
11985390-11985695,11985815-11986369
Length = 807
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 270 DWWPHYNLHHPKTCRFSTGFP*PAPDL*RSISIITPNGEDTTFLSFPD 127
DWW HP +F G P P++ R + +G T+F++ D
Sbjct: 280 DWWAANTKGHPDWKKFRKGLPEYLPEMDRMFEGVAVDG-STSFVATAD 326
>01_06_1630 +
38753016-38753209,38753904-38754039,38754291-38754404,
38755053-38755112,38755223-38755252,38755523-38756206
Length = 405
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 325 WPIKSTSEINILWMRNSRALPVSTKARLKLLTSAIPKKQLTSLISG---LMRRPEDILNL 495
W + S +N+ + R S +PV+ L + + +LT I G L+ R E
Sbjct: 266 WQLPDLSSLNLSYNRFSGEIPVNISEMTYLYSIGLQHNKLTGSIPGKFALLSRLESFNVS 325
Query: 496 QSLMTP*IPMQLPR 537
+L++ IP+ L +
Sbjct: 326 DNLLSGPIPVALSK 339
>10_05_0047 +
8524345-8524414,8524687-8524776,8525004-8525306,
8525413-8525872,8525962-8526043,8526157-8526351
Length = 399
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 258 EATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETI 416
E N K E N D T NK+ ++ T +EK S+ R+ + + E I
Sbjct: 335 EGDNSERKREKALEEYN-DEITRINKVAAASRLTAEEKRRSAERKVREKAERI 386
>06_03_0799 -
24703634-24703766,24703937-24704123,24704468-24704630,
24705533-24705718,24705978-24706105,24706282-24706411
Length = 308
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 237 WGDVNYSEATNPYISLSKTFSEM 305
W DV+Y AT + +L KT +E+
Sbjct: 138 WSDVDYCRATKNWYTLGKTLAEI 160
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +3
Query: 261 ATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETIDFSD---- 428
A N + L + ++ FT +K+ G+ T ++ S + S T+ ++
Sbjct: 685 ANNGALLLRQFVQTLSGPAFTWYSKLAPGSIRTWEQMQDSFLEHFYSTQRTVGITELTQT 744
Query: 429 ----TKKAADIINQWANEKTRGHIKSPISD 506
+KAAD IN+W N H PI++
Sbjct: 745 EQRANEKAADFINRWRNLSL--HCPQPITE 772
>01_04_0065 + 15627559-15627987,15630933-15631176,15632198-15632703
Length = 392
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 68 TALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSG-AG*GNPVENR 229
T +GD D K+ KE GKD V + ++ + + G G P+ENR
Sbjct: 101 TEIGDKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQGPLSTGFPIENR 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,838
Number of Sequences: 37544
Number of extensions: 278786
Number of successful extensions: 656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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