Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A05
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    31   0.49 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    29   2.6  
At3g28680.1 68416.m03579 prolylcarboxypeptidase-related weak sim...    29   2.6  
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P...    28   4.6  
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    28   4.6  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    27   6.1  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    27   8.0  
At4g13330.1 68417.m02083 expressed protein                             27   8.0  

>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 393 YQSEVETIDFSDTKKAADI--INQWANEKTRGHIKSPISDDTI 515
           Y +    +DF+ TK A  I  +N WA   T G IK  +SDD+I
Sbjct: 118 YNATCNQVDFA-TKPAEVINEVNAWAEVHTNGLIKEILSDDSI 159


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 228 DKFWGDVNYSEATNPYISLSKTFSEMNPDFFTMANKIYVGN 350
           D++     Y + T P I   KT S   P+     N++Y+GN
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGN 268


>At3g28680.1 68416.m03579 prolylcarboxypeptidase-related weak
           similarity to SP|P42785| Lysosomal Pro-X
           carboxypeptidase precursor (EC 3.4.16.2)
           (Prolylcarboxypeptidase) (PRCP) (Proline
           carboxypeptidase) {Homo sapiens}
          Length = 199

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 222 KIDKFWGDVNYSEATNPYIS-LSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQ 398
           KI K W +++   A    +S LSK F   NP    +  K YV   Y    +++ +     
Sbjct: 76  KIHKSWDEIDRIAAKPNSLSILSKNFKLCNPLNDIIELKSYVSYIYARTAQYSDNQFSVA 135

Query: 399 SEVETIDFSDTKKAADIINQ 458
              E I+ S     +D+++Q
Sbjct: 136 RLCEAINTSPPNTKSDLLDQ 155


>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At2g06430,
           At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
           At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
          Length = 836

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 276 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSE 404
           + L KT  E NP+ F   + ++VG+ +   +DE   +F  +   +QSE
Sbjct: 646 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESDMEFLDNKEGFQSE 693


>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 467 ISPLINDVSCFFGIAEVNSFNLALVLTGRAREFLIQSIFISDVD 336
           +SP++ND      +    S +L ++  G   E + QSI  + +D
Sbjct: 506 LSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEVAQSIIFALMD 549


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -1

Query: 533 GSCIGIYGVIRDWRFNMSSGLLISPLINDVSCFFGIAEVNSFNLALVLTGRAREFLIQSI 354
           G+ +G+ G+      N    + +SP++ND +    +    + +L ++  G   E + QSI
Sbjct: 528 GAIMGL-GIAYAGSQNDQIKIRLSPILNDANAPLDVIAFAALSLGMIYVGSCNEEVAQSI 586

Query: 353 FISDVD 336
             + +D
Sbjct: 587 IFALMD 592


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 115 GSIYIWEGQECCVFTIRRDDANASLQIRRRL 207
           GSIY+ E +ECC F +    AN  L +++RL
Sbjct: 402 GSIYVCEEEECC-FVLHEKCAN--LPMKKRL 429


>At4g13330.1 68417.m02083 expressed protein 
          Length = 428

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 92  YQWRHLRLSCCTRGQRNRMLARCR 21
           YQWR LR +  TR    +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,709
Number of Sequences: 28952
Number of extensions: 230396
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)