Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A04
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    28   0.37 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    24   6.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    23   8.1  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    23   8.1  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 24  LTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLR 131
           + +++  +Y  + LGLK +  +GKL  +S PG HL+
Sbjct: 248 IEMEDFVLY--ESLGLKDLVNQGKLETISFPGRHLQ 281


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 255 TPIIKKLNNGISLIIN 208
           T I+K LNNG S ++N
Sbjct: 113 TTIVKDLNNGDSFVLN 128


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 252 PIIKKLNNGISLIINE 205
           PIIKKL   +S I+NE
Sbjct: 337 PIIKKLVTSLSRIVNE 352


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -3

Query: 216 IINENQFNDIVN 181
           ++N+NQFNDI++
Sbjct: 332 LVNDNQFNDIMD 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,622
Number of Sequences: 5004
Number of extensions: 22688
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)