Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A04
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    46   8e-06
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    33   0.036
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169           29   1.0  
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870...    27   4.1  
02_05_0732 + 31303289-31304491,31304589-31304867                       27   4.1  
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371...    26   5.4  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYL 176
           +L  Q++ +Y +D +GLK +D EG++ F+S PG HL  +   M+  I+ PYL
Sbjct: 263 VLPPQKTKLYMEDWIGLKTLDDEGRVKFVSVPGGHLGISKTDMMKYIV-PYL 313


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 24  LTLQESAIYTQDRLGLKRMDKEGKLVFLSTPG 119
           L +  + +YT+D +GLK +++ G++ F+S PG
Sbjct: 195 LKIPTTKLYTEDWIGLKALEEAGRVKFVSVPG 226


>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
          Length = 627

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 202 ILIYDKRYTIIKFFNYWC 255
           I+IY K + ++++F +WC
Sbjct: 592 IIIYKKAFPVLRYFKFWC 609


>03_02_0467 +
           8707777-8707892,8708030-8708096,8708190-8708260,
           8708629-8708746,8708820-8708893,8709278-8709333,
           8709448-8709531,8709611-8709698,8709786-8709863,
           8710335-8710391,8710606-8711044
          Length = 415

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +3

Query: 81  DKEGKLVFLSTPGD 122
           DKEGK  FL TPGD
Sbjct: 341 DKEGKTSFLFTPGD 354


>02_05_0732 + 31303289-31304491,31304589-31304867
          Length = 493

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +3

Query: 15  RRILTLQESAIYTQDRLGLKRMDKEGKL-VFLST-------PGDHLRFTDQWMISEIINP 170
           RR++ L++  +  +D  GL R+D  GK+   L T        G H+ F+D   + E  NP
Sbjct: 311 RRVVLLEDDVVVQRDLAGLWRVDLGGKVNAALETCFGGFRRYGKHINFSDP-AVQERFNP 369


>10_08_0006 -
           14035990-14036135,14036246-14036339,14036845-14037176,
           14038040-14038094,14038682-14038750,14038940-14039039,
           14039212-14039255,14039705-14039873,14040262-14040333,
           14040439-14040519,14040586-14040650,14040796-14041260
          Length = 563

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 30  LQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMI 152
           +Q S  Y+    GLKR ++ G+L FL    D +     W++
Sbjct: 139 IQTSGAYSAREEGLKREEEAGRLKFLCYSNDGVDEHMIWLV 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,389,365
Number of Sequences: 37544
Number of extensions: 125393
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)