Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A04
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl prote...    49   8e-07
AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl pro...    42   9e-05
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    29   0.68 
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical p...    26   6.4  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    26   6.4  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    26   6.4  

>U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl protein
           thioesteraseprotein 1 protein.
          Length = 270

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 18/53 (33%), Positives = 35/53 (66%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYLV 179
           IL + E+ +Y +DR+GLK++ + G++ F+   GDHL+     ++++II  Y +
Sbjct: 218 ILPMNETDLYKEDRIGLKKLHESGRIHFMDVDGDHLQIPRSVLVNDIIKKYFM 270


>AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl
           protein thioesterase protein.
          Length = 254

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 15/37 (40%), Positives = 27/37 (72%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLR 131
           IL + E+ +Y +DR+GLK++ + G++ F+   GDHL+
Sbjct: 218 ILPMNETDLYKEDRIGLKKLHESGRIHFMDVDGDHLQ 254


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = -1

Query: 203 ISLTTLLINEVRINNFAYHPLIGKTKMVAGCREEN*FSFLIHSL*SQTILCINSRLLQC 27
           ISLT+L I  +R++++   PLI +   ++ C + N    L+ S+ ++ +L  + R+  C
Sbjct: 251 ISLTSLFICAIRMSDYITTPLIVQLSYLS-CNKRN-MKLLLSSMSARKLLSCSERVPPC 307


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 199 LILIYDKRYTIIKFFNYWCV*SKT*SRFFFSNIVLY 306
           L+L YDK Y IIK F +W   ++T S  FF ++V++
Sbjct: 31  LMLCYDKLYPIIKNF-FWM--ART-SYIFFISLVVF 62


>Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical
           protein ZK637.9b protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 196 KLILIYDKRYTIIKFFNYWCV*SKT*SRFFFSNIVL 303
           K++ + D+ YT +     WC+  KT + + F NIV+
Sbjct: 83  KVVHLPDQDYTDLSKSVQWCLEQKTLTSWEFENIVV 118


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 196 KLILIYDKRYTIIKFFNYWCV*SKT*SRFFFSNIVL 303
           K++ + D+ YT +     WC+  KT + + F NIV+
Sbjct: 83  KVVHLPDQDYTDLSKSVQWCLEQKTLTSWEFENIVV 118


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 196 KLILIYDKRYTIIKFFNYWCV*SKT*SRFFFSNIVL 303
           K++ + D+ YT +     WC+  KT + + F NIV+
Sbjct: 83  KVVHLPDQDYTDLSKSVQWCLEQKTLTSWEFENIVV 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,789,621
Number of Sequences: 27780
Number of extensions: 121548
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)