Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A03
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   2.2  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    26   2.8  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   6.6  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    24   8.7  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 183 NKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDD*PGI 311
           ++S T+ D+  L  S   Y  ++P++C  ++  C TP D  G+
Sbjct: 162 SQSYTSIDR--LNSSSSHYSKDVPLLCGSLTIDCPTPIDLRGM 202


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 151 YRDTQFPDSFLGVVQVCARIKF---TDINRIYETVEKIIILLLFIKYNS 14
           YR  +F  +F  V Q  A++KF    D++ +++   K +++ L   Y++
Sbjct: 52  YRSARFYHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYST 100


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 72  LLISVNLIRAQTCTTPRNESGNCVSLYDCEPL-LNLFRNKSRTAEDKKLLGDSQCGYENN 248
           ++I+ +L   Q     R+E   C +  D + + +N   + S      KLLGD        
Sbjct: 119 VVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVNYGSHHSAIFGYTKLLGDVPGCQAEY 178

Query: 249 IPMVCCPISNACKTPDD*P 305
           I +    I N CK PDD P
Sbjct: 179 IRVPFAEI-NCCKLPDDIP 196


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 177 INSVKAHNRIGTRNSLIHF*ELYRSVHESNLLIL 76
           I  ++ +N +GT   L HF +     H SN+ ++
Sbjct: 82  IKYLREYNCLGTGGGLYHFRDQILKGHTSNVFVM 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,409
Number of Sequences: 5004
Number of extensions: 35240
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)