Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A02
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          28   5.0  
SB_34936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)        27   8.7  

>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 170  KSAIFARNGGIRNPNGHIW-DGTKLG--EMRVVQFAISPL-PNPSAITG 304
            KS++FA    + +P G +W DG +L   E+R V+ A++ +  NP   +G
Sbjct: 1375 KSSVFAALFRMPDPTGEVWVDGVELASVEIRTVRKALAVITQNPVLFSG 1423


>SB_34936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 422 CSRIRLKRICLQSLLSLKYLRVIQIAYNFLIES*H 318
           C R  + +IC  S   L+YLR I+    FL+ + H
Sbjct: 5   CFRALIPQICENSCAILRYLRDIEFLQMFLLRAEH 39


>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -2

Query: 297 IAEGLGRGEIANCTTRISPSLVPSQM*PLGLRMPPLRAKIADFGIILSRKTQ*HLTRPGD 118
           +A+GL + E+    TR    L       + +R+ P+R +I    IIL+ +TQ  L   G 
Sbjct: 12  VADGLFKAELNEFLTR---ELAEDGYSGVEVRVTPIRTEI----IILATRTQNVLGEKGR 64

Query: 117 RTRDLRTTV 91
           R R+L + V
Sbjct: 65  RIRELTSVV 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,384
Number of Sequences: 59808
Number of extensions: 269728
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)