Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A02
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-11|CAC35844.1|  380|Caenorhabditis elegans Hypothetical...    29   1.9  
AF049709-1|AAC36062.1|  380|Caenorhabditis elegans tyrosylprotei...    29   1.9  
Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeo...    27   7.6  
U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeo...    27   7.6  
U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.       27   7.6  

>AL132904-11|CAC35844.1|  380|Caenorhabditis elegans Hypothetical
           protein Y111B2A.15 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 133 QVLLGFSTQYYPEVCNFCPQWRHSQSQWSHL 225
           +V  G  T+  P + N   QW+ S+ +W+ L
Sbjct: 94  EVRCGEETRVIPRILNLRSQWKKSEKEWNRL 124


>AF049709-1|AAC36062.1|  380|Caenorhabditis elegans tyrosylprotein
           sulfotransferase-A protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 133 QVLLGFSTQYYPEVCNFCPQWRHSQSQWSHL 225
           +V  G  T+  P + N   QW+ S+ +W+ L
Sbjct: 94  EVRCGEETRVIPRILNLRSQWKKSEKEWNRL 124


>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 185 QKLQTSG*Y*VEKPNST*PDPGIEPETSER---QSHRNTTAPPRQ 60
           QK   S    VEK  ST   P IEP TS +   ++ +++ APP++
Sbjct: 133 QKKSDSSNVKVEKEKSTEQKPTIEPSTSSKSAIETKKSSIAPPKK 177


>U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform a protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -1

Query: 262 LHHPHFAELS---SVPDVTXXXXXXXXXG-KNCRLRDNIE*KNPIALDPTRGSNPRPQND 95
           +HH    E S   S+  VT           K  R R N++     ALD     NPRP +D
Sbjct: 390 IHHVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNALDTFFALNPRPDHD 449

Query: 94  SRTVI 80
             T I
Sbjct: 450 KMTDI 454


>U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform b protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -1

Query: 262 LHHPHFAELS---SVPDVTXXXXXXXXXG-KNCRLRDNIE*KNPIALDPTRGSNPRPQND 95
           +HH    E S   S+  VT           K  R R N++     ALD     NPRP +D
Sbjct: 388 IHHVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNALDTFFALNPRPDHD 447

Query: 94  SRTVI 80
             T I
Sbjct: 448 KMTDI 452


>U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -1

Query: 262 LHHPHFAELS---SVPDVTXXXXXXXXXG-KNCRLRDNIE*KNPIALDPTRGSNPRPQND 95
           +HH    E S   S+  VT           K  R R N++     ALD     NPRP +D
Sbjct: 390 IHHVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNALDTFFALNPRPDHD 449

Query: 94  SRTVI 80
             T I
Sbjct: 450 KMTDI 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,031
Number of Sequences: 27780
Number of extensions: 206627
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)