Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A01
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    86   3e-18
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    31   0.12 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.28 
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    26   2.6  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   4.5  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    25   5.9  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   7.9  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   7.9  

>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 33/90 (36%), Positives = 55/90 (61%)
 Frame = +3

Query: 201 RNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGA 380
           R +    FCK+FN RTA      P+P ++ V   R++   IH PP+S+ + +   + +G+
Sbjct: 31  RGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLEKGS 90

Query: 381 MEPVRETSGKITLKHLYEIAKIKQQDPPLE 470
             P+ +  G+++LKH+YEIAK+K  DP L+
Sbjct: 91  SSPLHDIKGQLSLKHIYEIAKLKSTDPSLQ 120


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 302 ISIHFNPSGQWYTLLNISSPFIEIFTKSCYVNITLTKHWTQGWACSCHSGWYIGSQFRRM 123
           I + F+PS   Y+L     PF+   T S +V++ +    +    C C S  Y      R 
Sbjct: 208 IRLEFDPSSATYSLPPYQRPFLRGITHSIFVDLFIFLSPSSARHCLCWSLPYFQHYDLRF 267

Query: 122 I-NFFCYFF 99
           I +FF  F+
Sbjct: 268 IASFFTQFY 276


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 257 NISSPFIEIFTKSCYVNITLTKHWTQG---WACS 165
           +I+ P+I   T SC+ +I  T HW      W+CS
Sbjct: 300 DITRPYIPYRTVSCHDSIVSTMHWASTELLWSCS 333


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 323 NHKLVGPISIHFNPSGQWYTLLNISS 246
           N  +  P+S+ F+P+ QW T  N+ +
Sbjct: 171 NASMGNPMSLFFDPNHQWVTAENVDT 196


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 219 AFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLK 353
           A+C + +   +  ++ VPL + +    D   QL   Q PS+  LK
Sbjct: 136 AYCNEKDRYGSQRRETVPLKSALHELRDEQVQLQCRQAPSNQALK 180


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 210 NIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFL 350
           N AA C D  + T +I  G+P  +   VN  R  +  + QPP+++ +
Sbjct: 34  NAAAMCMDCIKMTTDITSGIPRES--TVNHCRECERYM-QPPNNWMI 77


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 305 PISIHFNPSGQWYTLLNISSP 243
           PIS+  NP+   Y  L +SSP
Sbjct: 137 PISLSINPASTSYEKLTVSSP 157


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 273 LPTRVKVNADRSYQLVIHQPPSSY 344
           +P +V +NA R   +++H P  ++
Sbjct: 466 IPNKVLINASRKRSVILHLPTETF 489


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 170 CSCHSGWYIGSQFRRMINFF 111
           C C + WY G+  R++ N F
Sbjct: 26  CLCCNPWYAGADTRQLANAF 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,872
Number of Sequences: 5004
Number of extensions: 31292
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)