Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A01
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0315 - 16686830-16687297 81 5e-16
03_01_0152 - 1211859-1211903,1212247-1212443,1213469-1213532,121... 73 1e-13
08_02_1010 - 23538517-23538750,23539199-23539507,23539902-235400... 32 0.21
03_03_0234 + 15669463-15669773,15669866-15670046,15670133-156702... 31 0.64
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065... 30 1.1
01_06_0382 - 28884450-28884662,28884681-28885469 29 1.5
12_02_0714 + 22451159-22451461,22451894-22452727 27 5.9
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721... 27 5.9
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 7.8
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 27 7.8
>10_08_0315 - 16686830-16687297
Length = 155
Score = 81.0 bits (191), Expect = 5e-16
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +3
Query: 207 INIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGAME 386
+N+ AFCKDFN RT K P+ + D +++ V+ P S+FLK+AAGI +
Sbjct: 42 LNLMAFCKDFNARTQKYKAETPMQVTLTAYKDSTFEFVVKSPSVSWFLKKAAGIETASGR 101
Query: 387 PVRETSGKITLKHLYEIAKIKQQDP 461
P ++L+H+YEIAK+KQ DP
Sbjct: 102 PGHTVVSSLSLRHVYEIAKLKQSDP 126
>03_01_0152 -
1211859-1211903,1212247-1212443,1213469-1213532,
1213630-1213802,1213889-1214075
Length = 221
Score = 72.9 bits (171), Expect = 1e-13
Identities = 34/86 (39%), Positives = 53/86 (61%)
Frame = +3
Query: 201 RNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGA 380
+ +NI +FCK++N +TA K G +P + V D+S+ ++ PP+S L +AAGI +G+
Sbjct: 89 KGVNIMSFCKEYNAKTAE-KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGIEKGS 147
Query: 381 MEPVRETSGKITLKHLYEIAKIKQQD 458
EP RE GK+T + IA+ K D
Sbjct: 148 KEPQREKVGKVTADQVRTIAQEKLPD 173
>08_02_1010 -
23538517-23538750,23539199-23539507,23539902-23540063,
23540521-23540710,23540881-23541059,23541155-23541298
Length = 405
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 442 FAISYKCF-NVILPDVSLTGSIAPRLIPAACFKK*DDGG 329
F + YK N +L D+S++ S AP PA F+ DD G
Sbjct: 170 FELKYKPLKNALLSDISISTSAAPTFFPAHYFETKDDNG 208
>03_03_0234 +
15669463-15669773,15669866-15670046,15670133-15670297,
15670426-15670992
Length = 407
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 418 NVILPDVSLTGSIAPRLIPAACFKK*DD 335
N +L D+ ++ S AP +PA CF+ DD
Sbjct: 172 NALLSDICISTSAAPTYLPAHCFQTTDD 199
>12_02_0711 +
22404710-22404824,22405726-22406288,22406386-22406547,
22406664-22407257
Length = 477
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 418 NVILPDVSLTGSIAPRLIPAACFKK*DDGG 329
N +L DV + S AP +PA CF+ D G
Sbjct: 234 NALLSDVCIGTSAAPTYLPAHCFRTHDGAG 263
>01_06_0382 - 28884450-28884662,28884681-28885469
Length = 333
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 243 RTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGAMEPVRETSG 407
R +K +P P V V+ DR++ +V H P F G G E + G
Sbjct: 205 RVTVLKTDLPYPNGVAVSRDRTHLVVAHTVPCQAFRYWLRGTKAGEYELFADLPG 259
>12_02_0714 + 22451159-22451461,22451894-22452727
Length = 378
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 418 NVILPDVSLTGSIAPRLIPAACFKK*D 338
N +L DV + S AP +PA CF+ D
Sbjct: 109 NALLSDVCIGTSSAPTYLPAHCFRTHD 135
>06_01_0934 -
7212408-7212794,7212887-7213416,7214192-7214302,
7214322-7214811
Length = 505
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 329 LMNHKLVGPISIHFNPSGQWYTLLNISSPFIEIFTKSC 216
++NH P+ + FN S ++Y+L +SS I + ++C
Sbjct: 353 IINHGGSTPLDVAFNKSTRYYSLSWLSSTSITMCLQAC 390
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 201 RNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQL 317
RN I KD +R K+G+ P V+ + SYQ+
Sbjct: 1168 RNSRIVPNMKDIIQRQTEEKKGITAPKSPSVDREDSYQI 1206
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 304 LSAFTLTRVGNGTPCLILAVLSLKSLQKAAMLI 206
L F LTR G G LI A++ L SL A ++
Sbjct: 429 LKIFGLTRCGRGETLLIAAIIVLGSLVAATEIV 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,087
Number of Sequences: 37544
Number of extensions: 195995
Number of successful extensions: 432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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