Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A01
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18190| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)                   27   6.0  
SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)                   27   6.0  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               27   7.9  

>SB_18190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +3

Query: 351 KQAAGISRGAMEPVRETSGKITLKHLYEIAKIKQQD 458
           ++  G  RG +   RE +G ++LK +YEIAKIK QD
Sbjct: 78  RREGGFQRGFLIGRREVAGTVSLKQIYEIAKIKHQD 113


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 130 RN*EPIY-QPEWQLQAHPWVQCL 195
           R+ EPIY  P  + ++HPW QC+
Sbjct: 360 RSVEPIYIMPLAEKESHPWYQCI 382


>SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)
          Length = 472

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/37 (29%), Positives = 26/37 (70%)
 Frame = +1

Query: 160 WQLQAHPWVQCLVSVILT*QLFVKISMKGLLILSRVY 270
           W+++A   V+C+VS+ +  ++ V+  ++ L+ +SRV+
Sbjct: 30  WRVRARFCVECVVSIAVVWRVRVRFCVECLVSISRVW 66


>SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)
          Length = 1198

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 239 IEIFTKSCYVNITLTKHWTQ---GWACSCHSGWYIGSQFR 129
           I IF KSC   + L + W +    WA +C S  Y G  F+
Sbjct: 400 IHIF-KSCDEGLELQEKWAKVALNWATTCSSRHYAGRSFQ 438


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 318 VIHQPPSSYFLKQAAGISRGAMEPVRETSGKITLKHLYE----IAKIKQQDPPLEW 473
           + H P     LK + GI+ G+++   E+   +  KHL E     + +K QD  L++
Sbjct: 730 ITHHPLVVALLKVSTGITSGSVDVGLESFKSVVSKHLQEGWCANSNVKDQDENLQF 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,580,038
Number of Sequences: 59808
Number of extensions: 220734
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)