Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A01
(477 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005002-1|AAH05002.1| 192|Homo sapiens mitochondrial ribosomal... 113 3e-25
AK223112-1|BAD96832.1| 192|Homo sapiens mitochondrial ribosomal... 113 3e-25
AF151871-1|AAD34108.1| 192|Homo sapiens CGI-113 protein protein. 113 3e-25
AB049638-1|BAB40843.1| 192|Homo sapiens mitochondrial ribosomal... 113 3e-25
BC108277-1|AAI08278.1| 166|Homo sapiens mitochondrial ribosomal... 112 7e-25
AB051338-1|BAB54928.1| 61|Homo sapiens mitochondrial ribosomal... 61 2e-09
AL139410-3|CAI12718.1| 902|Homo sapiens RUN and SH3 domain cont... 29 8.3
AL139410-2|CAI12719.1| 796|Homo sapiens RUN and SH3 domain cont... 29 8.3
>BC005002-1|AAH05002.1| 192|Homo sapiens mitochondrial ribosomal
protein L11 protein.
Length = 192
Score = 113 bits (272), Expect = 3e-25
Identities = 49/87 (56%), Positives = 68/87 (78%)
Frame = +3
Query: 198 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRG 377
QR ++I FCK+FNERT +IK+G+PLPT++ V DR++++ I QP SYFLK AAGI +G
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQD 458
A + +E +G +TLKH+YEIA+IK QD
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQD 127
>AK223112-1|BAD96832.1| 192|Homo sapiens mitochondrial ribosomal
protein L11 isoform a variant protein.
Length = 192
Score = 113 bits (272), Expect = 3e-25
Identities = 49/87 (56%), Positives = 68/87 (78%)
Frame = +3
Query: 198 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRG 377
QR ++I FCK+FNERT +IK+G+PLPT++ V DR++++ I QP SYFLK AAGI +G
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQD 458
A + +E +G +TLKH+YEIA+IK QD
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQD 127
>AF151871-1|AAD34108.1| 192|Homo sapiens CGI-113 protein protein.
Length = 192
Score = 113 bits (272), Expect = 3e-25
Identities = 49/87 (56%), Positives = 68/87 (78%)
Frame = +3
Query: 198 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRG 377
QR ++I FCK+FNERT +IK+G+PLPT++ V DR++++ I QP SYFLK AAGI +G
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQD 458
A + +E +G +TLKH+YEIA+IK QD
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQD 127
>AB049638-1|BAB40843.1| 192|Homo sapiens mitochondrial ribosomal
protein L11 (L11mt) protein.
Length = 192
Score = 113 bits (272), Expect = 3e-25
Identities = 49/87 (56%), Positives = 68/87 (78%)
Frame = +3
Query: 198 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRG 377
QR ++I FCK+FNERT +IK+G+PLPT++ V DR++++ I QP SYFLK AAGI +G
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQD 458
A + +E +G +TLKH+YEIA+IK QD
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQD 127
>BC108277-1|AAI08278.1| 166|Homo sapiens mitochondrial ribosomal
protein L11 protein.
Length = 166
Score = 112 bits (269), Expect = 7e-25
Identities = 48/87 (55%), Positives = 68/87 (78%)
Frame = +3
Query: 198 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRG 377
+R ++I FCK+FNERT +IK+G+PLPT++ V DR++++ I QP SYFLK AAGI +G
Sbjct: 15 ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 74
Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQD 458
A + +E +G +TLKH+YEIA+IK QD
Sbjct: 75 ARQTGKEVAGLVTLKHVYEIARIKAQD 101
>AB051338-1|BAB54928.1| 61|Homo sapiens mitochondrial ribosomal
protein L11 protein.
Length = 61
Score = 61.3 bits (142), Expect = 2e-09
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +3
Query: 321 IHQPPSSYFLKQAAGISRGAMEPVRETSGKITLKHLYEIAKIKQQD 458
I QP SYFLK AAGI +GA + +E +G +TLKH+YEIA+IK QD
Sbjct: 2 IGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQD 47
>AL139410-3|CAI12718.1| 902|Homo sapiens RUN and SH3 domain
containing 1 protein.
Length = 902
Score = 29.1 bits (62), Expect = 8.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +3
Query: 234 FNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGAMEPVRE--TSG 407
F+E K+G LP + DRS L++ P + +G G+ P RE T
Sbjct: 316 FHELAQKRKRGPGLPLVPQAKKDRSDWLIVFSPDTEL---PPSGSPGGSSAPPREVTTFK 372
Query: 408 KITLKHLYEIAKIKQQDPPLEW 473
++ + + +DPP+ W
Sbjct: 373 ELRSRSRAPAPPVPPRDPPVGW 394
>AL139410-2|CAI12719.1| 796|Homo sapiens RUN and SH3 domain
containing 1 protein.
Length = 796
Score = 29.1 bits (62), Expect = 8.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +3
Query: 234 FNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGAMEPVRE--TSG 407
F+E K+G LP + DRS L++ P + +G G+ P RE T
Sbjct: 316 FHELAQKRKRGPGLPLVPQAKKDRSDWLIVFSPDTEL---PPSGSPGGSSAPPREVTTFK 372
Query: 408 KITLKHLYEIAKIKQQDPPLEW 473
++ + + +DPP+ W
Sbjct: 373 ELRSRSRAPAPPVPPRDPPVGW 394
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,966,684
Number of Sequences: 237096
Number of extensions: 1185814
Number of successful extensions: 2065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2065
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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