Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A01
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M77697-10|AAA27905.1|  195|Caenorhabditis elegans Hypothetical p...   122   1e-28
U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase ...    31   0.32 
AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator prot...    31   0.32 
AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical ...    28   4.0  

>M77697-10|AAA27905.1|  195|Caenorhabditis elegans Hypothetical
           protein B0303.15 protein.
          Length = 195

 Score =  122 bits (294), Expect = 1e-28
 Identities = 65/134 (48%), Positives = 82/134 (61%)
 Frame = +3

Query: 69  SKSVARLKSMKKVAEKVDHSSKLRTNIXXXXXXXXXXXXXXXXQRNINIAAFCKDFNERT 248
           SK  AR++  KK   KV H + LRTNI                QR +N+A FCK+FN+ T
Sbjct: 3   SKGAARVR--KKEIVKVVHGALLRTNIKAQMASAAPPLGPQLGQRGLNVANFCKEFNKET 60

Query: 249 ANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGAMEPVRETSGKITLKHL 428
            + KQGVPLPTR+ V  DR+Y L I  P +++ LKQAAGI RG      E  GK+T+KHL
Sbjct: 61  GHFKQGVPLPTRITVKPDRTYDLEICTPTTTWLLKQAAGIGRGKASK-DEIVGKLTVKHL 119

Query: 429 YEIAKIKQQDPPLE 470
           YEIAKIK +D  L+
Sbjct: 120 YEIAKIKSRDKALQ 133


>U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase
           transcriptionalregulation mediator protein.
          Length = 246

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 321 IHQPPSSYFLKQAAGISRGAMEPVRETSGKITLKHLYEIAK 443
           +HQ P  Y L Q+  +  GA+EP+R   G++T    Y  AK
Sbjct: 111 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVTNYSRYNTAK 149


>AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator protein
           6 protein.
          Length = 250

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 321 IHQPPSSYFLKQAAGISRGAMEPVRETSGKITLKHLYEIAK 443
           +HQ P  Y L Q+  +  GA+EP+R   G++T    Y  AK
Sbjct: 115 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVTNYSRYNTAK 153


>AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.11 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 201 ADQALDPRVGLQLPFRLVYWFSISKNDQLFLLL 103
           AD ++  R  L +  RL +  SISKND+ F LL
Sbjct: 16  ADLSIPARAPLFIVHRLCFDRSISKNDECFYLL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,645
Number of Sequences: 27780
Number of extensions: 175612
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)