Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A01
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 423 HLYEIAKIKQQDPPL 467
           HL+E A I   +PPL
Sbjct: 234 HLFESANISLDEPPL 248


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 307 DLSAFTLTRVGNGTPCLILAVLSLKSLQKAAML 209
           DLS   +TR+   +P L L  L    LQ+ A++
Sbjct: 218 DLSRNEITRLQENSPLLDLRQLQELHLQRNAIV 250


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 306  SYQLVIHQPPSS 341
            ++QL++H PP S
Sbjct: 1358 THQLIVHAPPHS 1369


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 1   YHSCCHWKL 27
           Y+ CC WK+
Sbjct: 485 YYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 1   YHSCCHWKL 27
           Y+ CC WK+
Sbjct: 538 YYPCCWWKI 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,078
Number of Sequences: 438
Number of extensions: 1979
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)