Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A01
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35490.1 68417.m05043 ribosomal protein L11 family protein se...    82   2e-16
At1g32990.1 68414.m04063 ribosomal protein L11 family protein si...    72   2e-13
At5g51610.1 68418.m06398 ribosomal protein L11 family protein          44   4e-05
At1g77480.2 68414.m09023 nucellin protein, putative similar to n...    28   3.8  
At1g77480.1 68414.m09022 nucellin protein, putative similar to n...    28   3.8  
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    27   5.0  
At2g07674.1 68415.m00900 expressed protein                             27   8.7  

>At4g35490.1 68417.m05043 ribosomal protein L11 family protein
           several ribosomal proteins L11
          Length = 155

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 33/88 (37%), Positives = 54/88 (61%)
 Frame = +3

Query: 198 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRG 377
           Q  +N+ AFCKDFN RT   K   P+   +    D S++  +  P  S+++K+AAG+ +G
Sbjct: 38  QYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKG 97

Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQDP 461
           +  P   +   ++++H+YEIAK+KQ DP
Sbjct: 98  STRPGHLSVTTLSVRHVYEIAKVKQTDP 125


>At1g32990.1 68414.m04063 ribosomal protein L11 family protein
           similar to chloroplast ribosomal protein L11 GI:21312
           from [Spinacia oleracea]
          Length = 222

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 34/86 (39%), Positives = 53/86 (61%)
 Frame = +3

Query: 201 RNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQPPSSYFLKQAAGISRGA 380
           + +NI AFCKD+N RTA+ K G  +P  + V  D+S+  ++  PP+S  L +AAG+ +G+
Sbjct: 100 KGVNIMAFCKDYNARTAD-KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGS 158

Query: 381 MEPVRETSGKITLKHLYEIAKIKQQD 458
            +P ++  G IT+  L  IA  K  D
Sbjct: 159 KDPQQDKVGVITIDQLRTIAAEKLPD 184


>At5g51610.1 68418.m06398 ribosomal protein L11 family protein 
          Length = 182

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 17/50 (34%), Positives = 34/50 (68%)
 Frame = +3

Query: 300 DRSYQLVIHQPPSSYFLKQAAGISRGAMEPVRETSGKITLKHLYEIAKIK 449
           D+S+  ++  PP+S+ L +AAG+ +G+ +P +   G IT+  + +IA++K
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVK 141


>At1g77480.2 68414.m09023 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 432

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 332 RLMNHKLVGPISIHFNPSGQWYTLLNISSP 243
           R ++  +V P+S +  P G +Y LLNI +P
Sbjct: 47  RRLSSTVVFPVSGNVYPLGYYYVLLNIGNP 76


>At1g77480.1 68414.m09022 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 466

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 332 RLMNHKLVGPISIHFNPSGQWYTLLNISSP 243
           R ++  +V P+S +  P G +Y LLNI +P
Sbjct: 47  RRLSSTVVFPVSGNVYPLGYYYVLLNIGNP 76


>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
           bromodomain-containing protein low similarity to
           SP|P51123 Transcription initiation factor TFIID 230 kDa
           subunit {Drosophila melanogaster}; contains Pfam
           profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 390 VRETSGKITLKHLYEIAKIKQQDPPLE 470
           VR   GK++L+ + +I  + QQ+P +E
Sbjct: 704 VRSAKGKLSLRRINKIVAVGQQEPRME 730


>At2g07674.1 68415.m00900 expressed protein
          Length = 251

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 378 AMEPVRETSGKITLKHLYEIAKIKQQDPPL 467
           A++  R TSG+ +L+ LY+I K  Q+  PL
Sbjct: 198 ALDNPRTTSGEESLERLYDIWKDLQETGPL 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,748
Number of Sequences: 28952
Number of extensions: 160485
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)