Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_P23
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 31 0.062
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 30 0.14
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 28 0.44
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 1.8
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 26 2.3
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 2.3
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 2.3
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 25 3.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 4.1
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 4.1
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 5.4
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 25 5.4
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 5.4
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 5.4
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 25 5.4
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.4
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 31.1 bits (67), Expect = 0.062
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 359 GFQIMLKGGWD*NRGLGPDGLGKQYPIKTVQKNDKKGLGHK 237
GF+++ GW GLG G+ + IK K+D G+G K
Sbjct: 29 GFKLLSSYGWVNGNGLGEKQHGRIHNIKVSLKDDTLGIGAK 69
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 29.9 bits (64), Expect = 0.14
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -2
Query: 239 KKRKIEDPKQDTVKYKNGQILIKNYHDNKKLEIMFRREFY*STNIYY 99
+K +I++P V K+G I+++ Y NKKL + + FY + + Y+
Sbjct: 168 QKFEIDNPSLSPVD-KHGAIILRTYKKNKKLLPDYLKSFYNAGSSYF 213
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 28.3 bits (60), Expect = 0.44
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = -2
Query: 359 GFQIMLKGGWD*NRGLGPDGLGKQYPIKTVQKNDKKGLGHKKRKIEDPKQDTV 201
G +++ K G+ +GLG + G P+++ + ++ GLG + + E +++ +
Sbjct: 119 GAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLGAVRERTEKQRKEAI 171
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 278 KTVQKNDKKGLGHKKRKIEDPKQDTVKYKNGQILIKNYHDNKK 150
KT K K KK+K + K+D +K K+ ++ + + H K+
Sbjct: 132 KTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKR 174
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 362 KGFQIMLKGGWD*NRGLGPDGLGKQYPIKTVQK 264
KG Q++ GW +GLG + G P+ V++
Sbjct: 148 KGKQLLEMMGWSRGKGLGSENQGMVDPVVAVKE 180
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 281 IKTVQKNDKKGLGHKKRKIEDPKQDTVKY 195
+KT++KN K+ K+ +ED K + K+
Sbjct: 119 LKTMKKNRKQSFQRKRNILEDGKSEEEKF 147
>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 38 YFLKISFSKIYLVLIKKIPIDNKCWYFNKILF*TLF 145
Y+L I S +Y L + I KC +N LF + F
Sbjct: 45 YWLSIRLSLLYFKLTEAISFTEKCEKYNISLFDSTF 80
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 206 TVKYKNGQILIKNYHDNKKLEIMF 135
TV+ NG+ +I+N H+ + EI F
Sbjct: 1156 TVRISNGKDVIENIHEGDQAEISF 1179
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 179 LIKNYHDNKKLEIMFRREFY 120
L KN H NKKLE + + E +
Sbjct: 101 LKKNLHSNKKLEAVLKEELH 120
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 83 KKIPIDNKCWYFNKILF-*TLFPTFCY 160
KK+P CWY+ I+F TLF + Y
Sbjct: 1162 KKVPCTFCCWYYAGIIFLNTLFHHYEY 1188
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/43 (20%), Positives = 25/43 (58%)
Frame = +3
Query: 153 FVIMIILYQYLSVFVFNCILFWVFNLSLLMSKTFLIILLHSFY 281
+V++++LY+ F C++ ++ + L ++ + +I S+Y
Sbjct: 204 WVLLVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYY 246
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 5.4
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 195 VFNCILFWVFNLSLL--MSKTFLIILLHSFYWILFS 296
+F+ I FWV+ SLL + KT I L S ++L S
Sbjct: 321 IFSSIFFWVWCHSLLYIVPKTLPIKPLSSLLFVLIS 356
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = -2
Query: 221 DPKQDTVKYKNGQI-----LIKNYHDNKKLEIMFRREFY 120
+P + + KNG + + N HD+K +E R FY
Sbjct: 4 NPSRSNSRSKNGDLESGLKFVDNDHDSKDIEARNRNHFY 42
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 195 VFNCILFWVFNLSLLM 242
+F C +WVFNL L+
Sbjct: 449 IFPCNQYWVFNLEFLL 464
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 320 RGLGPDGLGKQYPIKTVQKNDKKGLG-HKKRKIEDPKQDTVKYKN 189
+ L + + P+K KNDK+ LG ++ +E+P ++ +N
Sbjct: 200 KSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLHLIRN 244
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 24.6 bits (51), Expect = 5.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 275 TVQKNDKKGLGHKKRKIEDPKQDTVKYKNGQILIKNYHDNKKL 147
T Q KKG KK++ ++ K++T+ KN ++K++ KK+
Sbjct: 79 TFQTPTKKGNKTKKKRKKEKKKETIVEKNK--VLKSFALYKKI 119
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 335 GWD*NRGLGPDGLGKQYPIKTVQKNDKKGLGHKKRKIE 222
GW+ GLG + G + I+ GLG+K KI+
Sbjct: 502 GWNKGSGLGTNENGIKEAIQPTMYLPGVGLGNKGSKIQ 539
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,976
Number of Sequences: 5004
Number of extensions: 30282
Number of successful extensions: 103
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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