Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P22
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   3.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.0  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    25   9.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.1  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 267 ELENALRRDPDAKANKPA-----FEAKQAFIRQYSICKIVELCY 383
           E +  +RR  + +A++ A     FEA+  F +Q+   K V+ CY
Sbjct: 45  ERQKLVRRIKNCRASEDADTLGRFEAEFEFAKQFDFTKFVDYCY 88


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 201 FEVGPEIINCENINDIKVQLDSELENAL 284
           F++ P++    NI DI+ Q+ S  E  L
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQSFREKEL 43


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 23/62 (37%), Positives = 26/62 (41%)
 Frame = +3

Query: 183  STGVLHFEVGPEIINCENINDIKVQLDSELENALRRDPDAKANKPAFEAKQAFIRQYSIC 362
            S   L F  G  I    NI+D  VQL+S L    R      AN+ A   KQ     Y I 
Sbjct: 2632 SNPTLDFMTGILISTLGNIHDAPVQLNSILLENARGTLSEMANRVASHYKQQV--GYQIY 2689

Query: 363  KI 368
            KI
Sbjct: 2690 KI 2691


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 432 KLVTLWLPLLYCER-YRHNKVRLFCKLSIVE*TLAS 328
           K+VT+    L C+  Y+  K+R FC LSI +  +A+
Sbjct: 84  KMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAA 119


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 315  PAFEAKQAFIRQYSICKIVELCYVDIVHNIRAAAKVLPASAF---FRDVMKNVAV*SY*Y 485
            P  E+ +   RQ    K+  L   DI  ++    K++ + A     RDV  N AV S+ Y
Sbjct: 1223 PESESIRRTGRQIKFYKVKALTKYDIDFSLFRRYKIVSSDALPAIVRDVTLNAAVFSHIY 1282

Query: 486  H 488
            H
Sbjct: 1283 H 1283


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 231 ENINDIKVQLDSELENALRRD---PDAKA--NKPAFEAKQAFIRQYSICKIVEL 377
           + + D+  +L S  ++ + RD   P A++  N      K   IR Y++C IVEL
Sbjct: 25  KRLRDLLGELTSLSQDTIDRDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVEL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,825
Number of Sequences: 5004
Number of extensions: 41275
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)