Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P22
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0805 - 23329048-23329322,23330049-23330301,23330793-233310...    28   5.3  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    27   9.2  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    27   9.2  

>12_02_0805 -
           23329048-23329322,23330049-23330301,23330793-23331029,
           23332048-23332176,23334205-23334210
          Length = 299

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 60  LNIVGNIVIELGEKSKLFSGTYTAQATS 143
           L+ +GN  I LGE+ KLF+ T  A  T+
Sbjct: 42  LDFIGNGTISLGEQVKLFTKTKEAMITA 69


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +2

Query: 404 KSGSQSVTSFRLLQGCHEKCR----CLILLISYGL-YYFYCT 514
           KS SQ+  S  L QGCH+ C     C   +   GL +Y +CT
Sbjct: 554 KSNSQTYMSISL-QGCHKNCNQKGACHSSIDESGLTFYSFCT 594


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 216 EIINCENINDIKVQLDSELENALRRDPDAKA 308
           +I++C  ++D + QL  E E  LRR  D  A
Sbjct: 126 KIVDCGEVSDSQNQLKGEKEKKLRRTEDNSA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,842,165
Number of Sequences: 37544
Number of extensions: 234981
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)