Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P20
         (574 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107874-1|AAI07875.1|  327|Homo sapiens coenzyme Q5 homolog, me...    42   0.002
BC004916-1|AAH04916.2|  325|Homo sapiens COQ5 protein protein.         42   0.002
AK222610-1|BAD96330.1|  327|Homo sapiens hypothetical protein MG...    42   0.002
D87060-1|BAB46916.1|  456|Homo sapiens cerebral protein-1 protein.     31   3.8  
BC001071-1|AAH01071.1|  456|Homo sapiens KIAA0409 protein.             31   3.8  
AB007869-1|BAA23705.1|  464|Homo sapiens KIAA0409 protein.             31   3.8  
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3...    30   6.7  
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha...    30   6.7  

>BC107874-1|AAI07875.1|  327|Homo sapiens coenzyme Q5 homolog,
           methyltransferase (S. cerevisiae) protein.
          Length = 327

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 121 FGIRNCTHIEKVLEEAYRVLVPGG 192
           FGIRN THI++ L+EA+RVL PGG
Sbjct: 217 FGIRNVTHIDQALQEAHRVLKPGG 240


>BC004916-1|AAH04916.2|  325|Homo sapiens COQ5 protein protein.
          Length = 325

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 121 FGIRNCTHIEKVLEEAYRVLVPGG 192
           FGIRN THI++ L+EA+RVL PGG
Sbjct: 215 FGIRNVTHIDQALQEAHRVLKPGG 238


>AK222610-1|BAD96330.1|  327|Homo sapiens hypothetical protein
           MGC4767 variant protein.
          Length = 327

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 121 FGIRNCTHIEKVLEEAYRVLVPGG 192
           FGIRN THI++ L+EA+RVL PGG
Sbjct: 217 FGIRNVTHIDQALQEAHRVLKPGG 240


>D87060-1|BAB46916.1|  456|Homo sapiens cerebral protein-1 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 THIEKVLEEAYRVLVPGGTLHVCGVQS 219
           T+I   LEEA RVL PGG L V  V S
Sbjct: 369 TNIRDFLEEANRVLKPGGLLKVAEVSS 395


>BC001071-1|AAH01071.1|  456|Homo sapiens KIAA0409 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 THIEKVLEEAYRVLVPGGTLHVCGVQS 219
           T+I   LEEA RVL PGG L V  V S
Sbjct: 369 TNIRDFLEEANRVLKPGGLLKVAEVSS 395


>AB007869-1|BAA23705.1|  464|Homo sapiens KIAA0409 protein.
          Length = 464

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 THIEKVLEEAYRVLVPGGTLHVCGVQS 219
           T+I   LEEA RVL PGG L V  V S
Sbjct: 377 TNIRDFLEEANRVLKPGGLLKVAEVSS 403


>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
            chain protein.
          Length = 1745

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 48   FCCVCAYADNCLLPDESYSAYTIAIWDKE 134
            FC   A  + CL PD+ +    +A W KE
Sbjct: 1575 FCNFTAGGETCLYPDKKFEIVKLASWSKE 1603


>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
            preproprotein variant protein.
          Length = 1658

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 48   FCCVCAYADNCLLPDESYSAYTIAIWDKE 134
            FC   A  + CL PD+ +    +A W KE
Sbjct: 1488 FCNFTAGGETCLYPDKKFEIVKLASWSKE 1516


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,463,229
Number of Sequences: 237096
Number of extensions: 1403091
Number of successful extensions: 1812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)