Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P20
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...    48   6e-06
Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical p...    32   0.25 
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +1

Query: 85  YQTNHTVLTR*PFGIRNCTHIEKVLEEAYRVLVPGGTLHV 204
           +++N   L    FGIRNCTH EKV+ EA+RVL PGG L +
Sbjct: 162 FESNTYDLFTMSFGIRNCTHPEKVVREAFRVLKPGGQLAI 201


>Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical
           protein C08B6.13 protein.
          Length = 303

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 435 CTILFTCDFINKTHYYYKLLLLFNCIIVIMGKDIICGITVIVV 563
           C  L   DF+ K+HY   L L+ N +IV+  K    G+  +V+
Sbjct: 158 CNYLIWPDFVYKSHYLLILTLILNVMIVVYAKLRRSGVFKVVI 200


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 198 SCVWSSITSLTTR*QVVS-YKALHIPAHSRRFGYRLCLPNTNPITKHGRL 344
           +CV S +  +    +V   Y+ LHIP  S +FG      NT    ++GR+
Sbjct: 357 ACVVSPVGKILYHNKVTDEYEELHIPTMSSKFGVMQKFYNTINDIQYGRI 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,474,048
Number of Sequences: 27780
Number of extensions: 234331
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)