Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P18
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    62   6e-11
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    32   0.072
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    27   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   3.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   8.3  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   8.3  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 62.1 bits (144), Expect = 6e-11
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
 Frame = +3

Query: 171 GVFRGSWMKSRRGRP-IEAYRGIRYAEPPVGELRFQPPILIEH-YTAEVDATQEGPACPQ 344
           GV  G  +    G+     + GIRYA+PPVG+LR++ P+ +E  Y    D  Q    CPQ
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 345 PVYDN---------YPVDEDCLRLNVYTHGHGQKLR---PVIVYMHPGGFYSVSG---RS 479
           P Y+N         +  DEDCL LN++    G+K     PV+ ++H GG+  V       
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPA-GEKPAEGWPVLYFIH-GGWLQVGNPLHYR 119

Query: 480 DVSGPEYQLD---RDVVIVTINYRLASLGFLS 566
                + Q D      ++V+  +RL   GFL+
Sbjct: 120 QCDPQDLQADGSPAKFILVSPGHRLNLFGFLA 151


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 31/126 (24%), Positives = 49/126 (38%)
 Frame = +3

Query: 117 STQSPQEKNTAPLTRSTSGVFRGSWMKSRRGRPIEAYRGIRYAEPPVGELRFQPPILIEH 296
           S   P   N  P+  + + +   S+M+S +  P+ +Y   RY       L  +P      
Sbjct: 284 SAAHPDGNNALPMDNTHANI---SYMQSSQSMPVNSYSYDRYTPNQPSYLESKPGNHQPS 340

Query: 297 YTAEVDATQEGPACPQPVYDNYPVDEDCLRLNVYTHGHGQKLRPVIVYMHPGGFYSVSGR 476
           YT+E        + PQ +  N P   + L +N YT  H   L       + G   S+S  
Sbjct: 341 YTSE-QPMYSTASVPQQI-SNGPTAVNGLPMNSYT-PHSNHLHSPSPNSNSGPTDSLSAP 397

Query: 477 SDVSGP 494
           +  S P
Sbjct: 398 NSTSSP 403


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 54  SATYGFCHNKKQCHREKNGVSSTQSPQEKNTAPL 155
           S+TYGFC      H+ KN  +S    +++N++ L
Sbjct: 224 SSTYGFCTQIAVFHQSKNNAASHCFLKDQNSSIL 257


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 163 DLVSGAVFFSCGDCVDDTPFFSRWHCFLL*QNP 65
           D  S  +FF    C +  P F    CF   QNP
Sbjct: 359 DYHSWRIFFGSDRCANHPPSFDERSCFTSKQNP 391


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 51  ISATYGFCHNKKQCHREKNGVSSTQSPQEK-NTAPLTRSTS 170
           I  +  F    K     +N +SST+SPQ K +  P +R+ S
Sbjct: 804 IHQSNAFTPRGKHASGSRNSISSTKSPQHKLSDQPRSRNNS 844


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 163 DLVSGAVFFSCGDCVDDTPFFSRWHCFLL*Q 71
           DL+ G  FF+ G   DD P+ +    +L+ Q
Sbjct: 401 DLIPGMFFFAKGSSYDDIPYVAIGVTYLITQ 431


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 569 GA*ETKRSKSVVDGDDDNISVELVLRTGDIAAP 471
           G+ ET + K  VD   +NI  EL   TGDI  P
Sbjct: 187 GSRETLKKKPFVD---ENIPAELHTTTGDILKP 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,056
Number of Sequences: 5004
Number of extensions: 54185
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)