Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P17
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    31   0.13 
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    28   1.2  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.1  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   3.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.4  

>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 519 RVSWKLYPIWYKNKVYFKILNTY 587
           R SW+ YP+W + K+Y K+L  Y
Sbjct: 308 RKSWETYPLWVQVKLYEKVLVPY 330


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 253 KGMQMTSHSVVITTPQDNQTSSNTL 327
           KGM++  ++VVI TP    T+SNTL
Sbjct: 283 KGMRVPKNAVVIRTPLVLDTTSNTL 307


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 405 DPVLITNKRDELALKLELKTDYAG 476
           D + I NKR   ALK  LK +Y G
Sbjct: 231 DSIAILNKRGPYALKYSLKPEYKG 254


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 294 SSRQPNVVEYAYSLWYRSGEDIVKVYFPI---EFRLLFNEDP--VLITNKRD 434
           +S+Q  VVE     W +S +  V+V FP+   +F  +  E P  VL T+  D
Sbjct: 637 NSKQIQVVERKIQNWRKSAQLAVEVLFPVFSLKFTTMLQEVPQSVLRTSAND 688


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 507 KTGPRVSWKLYPIWYKNKVYFKILNTYH 590
           K  P+V+WK + IW   K   K ++++H
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFH 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,466
Number of Sequences: 5004
Number of extensions: 42483
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)