Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P17
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-6|CAA95792.1|  328|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z71259-6|CAA95792.1|  328|Caenorhabditis elegans Hypothetical
           protein F13G3.6 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +3

Query: 390 LLFNEDPVLITNKRDELALKLELKTDYAGDRASFGAGQTKTGPRVSWKLYPIWYKNKVYF 569
           L FN+   + +  R +  L+L  K   +GD   F  GQ    P  S   Y  W  + +  
Sbjct: 97  LCFNDADDVSSPNRIKSQLELATKLSKSGDDLIFVGGQFHRLPEGSTTRYTKWANSMIGD 156

Query: 570 KILNTYHTQY 599
           KI +  +T +
Sbjct: 157 KIRSQVYTSH 166


>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 384 FRLLFNEDPVLITNKRDELALKLELKTDYAG 476
           FR++ N DP ++   R  +  + EL  DY G
Sbjct: 534 FRIILNVDPFVLKKSRLHIRFEGELALDYGG 564


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 384 FRLLFNEDPVLITNKRDELALKLELKTDYAG 476
           FR++ N DP ++   R  +  + EL  DY G
Sbjct: 534 FRIILNVDPFVLKKSRLHIRFEGELALDYGG 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,791
Number of Sequences: 27780
Number of extensions: 231446
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)