Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P09
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   141   7e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   138   8e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.00 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.3  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   4.0  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   7.0  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   7.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   9.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  141 bits (342), Expect = 7e-35
 Identities = 67/101 (66%), Positives = 77/101 (76%)
 Frame = +2

Query: 203 GAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT 382
           G FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N 
Sbjct: 108 GNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNN 167

Query: 383 KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 505
           K   SIGL+W+LLAREVLR+RG LSR   WDV+ DL+FYRD
Sbjct: 168 KGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208



 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 42/68 (61%), Positives = 50/68 (73%)
 Frame = +1

Query: 1   YKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATP 180
           +KRR DG H++NL +TWEK           E+PADV V+S+R +G RAVLKFAAHTGAT 
Sbjct: 41  WKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATA 100

Query: 181 IAGRFTPG 204
           IAGRFTPG
Sbjct: 101 IAGRFTPG 108


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  138 bits (333), Expect = 8e-34
 Identities = 66/101 (65%), Positives = 76/101 (75%)
 Frame = +2

Query: 203 GAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT 382
           G FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N 
Sbjct: 109 GNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINN 168

Query: 383 KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 505
           K   SIGL W+LLAREVLRLRG +SR   W+V+ DL+FYRD
Sbjct: 169 KGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209



 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 45/68 (66%), Positives = 50/68 (73%)
 Frame = +1

Query: 1   YKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATP 180
           +KRR DG H+INL +TWEK           E+PADV VISSR +G RAVLKFAAHTGAT 
Sbjct: 42  WKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATA 101

Query: 181 IAGRFTPG 204
           IAGRFTPG
Sbjct: 102 IAGRFTPG 109


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +2

Query: 242 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 421
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 422 AR 427
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 290 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 400
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 398 IGLMWWLLAREVLRLRGVLSRDQRWD 475
           IGL W L  REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 295 FSNWLMILSRVQNNQQPWFA 236
           F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 474 MLSLTCSSIVTLKRVRRKSNKLRNRLSS---LPKWKRRRQFMRNGLRMLNQLHHGL 632
           ML +  +  +++  ++R++  ++ +L     LP W    ++ R G  MLN+L   L
Sbjct: 1   MLGIRKNIRISVNFLQRRTITVKQKLGKNRPLPGWDPNSEYFRPGPTMLNRLQEHL 56


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 407 MWWLLAREVLRLRGVLSRDQRW 472
           +WW L+R+  R    LSR  +W
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKW 89


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 326 LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLSRDQRWDV 478
           L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L G  +    W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 530 ALPSHSLQGHDRRTSQRQHPNAGH 459
           A+ SHS + H +RT+Q+      H
Sbjct: 546 AISSHSSESHSKRTTQQPKSTPNH 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,403
Number of Sequences: 5004
Number of extensions: 44170
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)