Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_P09
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 142 2e-34
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 142 2e-34
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 32 0.34
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 29 3.1
04_04_0157 + 23165638-23166633 28 5.5
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 28 5.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 142 bits (345), Expect = 2e-34
Identities = 62/101 (61%), Positives = 77/101 (76%)
Frame = +2
Query: 203 GAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT 382
G FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 110 GTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169
Query: 383 KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 505
K SIG ++WLLAR VL++RG + +WDV+VDLFFYRD
Sbjct: 170 KGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/68 (55%), Positives = 46/68 (67%)
Frame = +1
Query: 1 YKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATP 180
YKRR DG ++INL +TWEK E+P D+ V S+R +GQRAVLKFA +TGA
Sbjct: 43 YKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHA 102
Query: 181 IAGRFTPG 204
IAGR TPG
Sbjct: 103 IAGRHTPG 110
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 142 bits (345), Expect = 2e-34
Identities = 62/101 (61%), Positives = 78/101 (77%)
Frame = +2
Query: 203 GAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT 382
G FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 110 GTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169
Query: 383 KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 505
K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRD
Sbjct: 170 KGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/68 (55%), Positives = 46/68 (67%)
Frame = +1
Query: 1 YKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATP 180
YKRR DG ++INL +TWEK E+P D+ V S+R +GQRAVLKFA +TGA
Sbjct: 43 YKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHA 102
Query: 181 IAGRFTPG 204
IAGR TPG
Sbjct: 103 IAGRHTPG 110
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 468 VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLNQLHHGLK 635
VGM+ T S + LK + NKL + L W Q++R + + Q+ GL+
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLRLNICNVGQIVRGLR 159
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = -2
Query: 611 QHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPNAGHD*EHHGVS 435
QH Q P ALP P ++ + S H SQ Q P + H HH S
Sbjct: 120 QHQQQTPQAALQALPPPNSTASSPIPISSIAPSSPRHPHHHSQPQQPQSHHHHHHHSGS 178
>04_04_0157 + 23165638-23166633
Length = 331
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 56 FSHVRRRLITCVPSPRRL 3
FSH+RRRL+ +P+P L
Sbjct: 5 FSHLRRRLLAAIPNPNLL 22
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 158 LPTLAQHQLLDVSLLGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 298
+P+L+ H LLD+ A+ R PR++ PA P T A
Sbjct: 1 MPSLSCHNLLDLVAAADDAAPSPASLRLPRVMSAASPASPTSPSTPA 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,510,258
Number of Sequences: 37544
Number of extensions: 313447
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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