Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P06
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    28   0.69 
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   8.5  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 303 ISVIQYTHVLLFSFVEDIRIDGHSTKKIYCLISFVILYIISFYLYSFTSFILYLL 467
           +S+I + H+  F     + + G  T  I   +SF+ L I +FYL +F   +L  L
Sbjct: 407 LSII-FIHIYCFKITSWVNLYGWITCTIARTLSFIKLNIRTFYLTAFLCALLNFL 460


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 384 IYCLISFVILYIISFYLYSFTSFILYLLCRPIIY 485
           ++C + +    I+ F LY+   F+L+LL  P+++
Sbjct: 10  VHCSVLYKFNNIVKFDLYNVLLFLLFLL--PVLF 41


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 320 YSCTLIFVC*RYTYRWSFNEKNIL 391
           +S  ++  C  Y Y W+FN+ N L
Sbjct: 342 HSGRIVSACQEYCYVWNFNKANPL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,999
Number of Sequences: 5004
Number of extensions: 37564
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)