Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P06
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    30   0.92 
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    29   1.6  

>04_04_1183 -
           31537196-31537290,31537665-31537986,31538176-31538277,
           31538826-31539071,31539385-31539506,31539588-31540344,
           31540447-31540770,31540872-31541052,31541208-31541602,
           31541877-31541942,31542225-31542377,31542593-31542691,
           31542776-31542982,31543432-31543572,31543852-31544019,
           31544302-31544395,31544479-31544585,31545140-31545274,
           31545549-31545656,31545975-31546049,31546197-31546262,
           31546500-31546556,31546678-31546702,31546809-31546889,
           31546966-31547080,31547211-31547370,31547444-31547483,
           31547599-31547780,31547905-31548234
          Length = 1650

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 267 SIFQVLSPTVLLISVIQYTHVLLFSFVEDIRIDGHSTKKIYCLISFVILY--IISFYLYS 440
           SI ++ +   +L+ +   T + ++ F   IR        IY L+    ++  ++S   Y 
Sbjct: 114 SIIEIAAWCCMLVMIALETRIYIYEFRWYIRF-----VVIYILVGEAAMFNLVLSVRQYY 168

Query: 441 FTSFILYLLCRPIIY*LLF 497
            +S I YL C  II+ LLF
Sbjct: 169 SSSSIFYLYCSEIIFKLLF 187


>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 273 FQVLSPTVLLISVIQYTHVLLFSFVEDIR--IDGHSTKKIYCLISFV-ILYIISFYLYSF 443
           F  LSP +L ++V     +++  F+E +   I G   K+  C++  V  LY++  +L  F
Sbjct: 517 FYELSPDLLEVAVAHIQLIIVTKFIEKLEQDIPGEGVKEQLCILCNVYALYLVHKHLGDF 576

Query: 444 TS 449
            S
Sbjct: 577 LS 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,123,316
Number of Sequences: 37544
Number of extensions: 167564
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)