Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P06
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical
           protein Y7A9C.9 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
 Frame = +3

Query: 279 VLSPTV-LLISVIQYTHVLLFSFVEDIRIDGHSTKKIYCLISFVILYIISFYLYSFTS-- 449
           +L PTV  + +++  T  L  SF+  + +  +S  ++  LI F+I+ +I+F LY  T   
Sbjct: 53  LLFPTVGHVYNMVTITFYLFVSFIICMSLFMNSGPELSNLILFIIVALITFALYLSTEAF 112

Query: 450 -FILYLL 467
            F+++LL
Sbjct: 113 HFLIFLL 119


>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 144 VFSGVKIQTVIIRKVYNICDGLFLFCLSMLVHEHQVTKI 28
           + +G  IQ + +  + NI   +FLFC  M    HQ   I
Sbjct: 38  ILTGFAIQKLFMESIINISTRMFLFCGLMCCSLHQTAYI 76


>Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical
           protein M106.2 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 384 IYCLISFVILYIISFYLYSFTSFILYLL 467
           ++ LIS ++ Y   F LY  TSF++++L
Sbjct: 348 LFSLISLIVFYFAPF-LYEGTSFVIFIL 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,950,797
Number of Sequences: 27780
Number of extensions: 188811
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)