Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P03
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   1.6  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   1.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   3.6  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.3  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   8.4  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +3

Query: 138  SRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD-- 311
            S + +++G + +  +GT G    +   G    K S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 312  -NVNGHGATLTKTHIPGFGDKMTAAGKV 392
              +  HG T+   HI   GD MT  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 369 KMTAAGK--VNLFHNNNHDFSAKAFATKNMPNIPQVPKLQHCRCR 497
           K TA+     +L H +N  F A A   ++   IPQ  K  H R R
Sbjct: 254 KRTASSNSLTDLLHASNQTFMAPASGLQSTEEIPQFSKTGHSRGR 298


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 476 FRNLRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 366
           +  +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 200 YDGMARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 240  SALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNN 413
            +A  SV++ N ++  +A++G     +NG GA    T    F        + NL HNNN
Sbjct: 1036 TAGASVEIQNNIE--SASSGGDKTQLNGPGADQPVTATITFDKTSPWRNRENLSHNNN 1091


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 309 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 398
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 180 DGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 359
           D +SGA++ V  T     +    GS+  T+ +     T+G   + V     T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 283 PNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSE 176
           PNF +L    EP A+ L F     G+   +  +PS+
Sbjct: 106 PNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSK 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,671
Number of Sequences: 5004
Number of extensions: 38191
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)