Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P02
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.45 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   1.4  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    27   3.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   5.6  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   7.4  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   9.7  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   9.7  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   9.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +1

Query: 454 SLMYPTSTLSVAE*TICSKIRLVHQRPPLTRTSSIVTITPWTES*TSSRVLTPRSISTPA 633
           S + PTST + +     S +       PL+ ++   T T  +    ++  L   S+STP 
Sbjct: 674 SSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPL 733

Query: 634 SRSSIHPS 657
           S SS +PS
Sbjct: 734 SNSSAYPS 741



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +1

Query: 454 SLMYPTSTLSVAE*TICSKIRLVHQRPPLTRTSSIVTITPWTES*TSSRVLTPRSISTPA 633
           S + PTST + +     S +       PL+ ++   T T  +    ++  L   S STP+
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPS 671

Query: 634 SRSSIHPS 657
           S SSI P+
Sbjct: 672 SNSSIVPT 679


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 132 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 308
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 309 V 311
           +
Sbjct: 500 L 500



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 288 AGVALDNVNGHGVSLTDTHIPG 353
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 510 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFN 626
           +KI ASAT    DFI  N+      +N F S DTS++ N
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESN 151


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = -1

Query: 646 SNFLKRALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 500
           SNF++R  +S  V G+   FSF SRE S R +K + +A+   P L ++I
Sbjct: 587 SNFVERWFQS--VIGV---FSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 295 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 119
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 118 SSGSS 104
            S  S
Sbjct: 359 KSAKS 363


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 316 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 170
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 549 FINRNDYSLDGKLNLFKSPDTSVD 620
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 477 TVGGGIDYMFKD-KIGASATAAHTDFIN 557
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  LCVGVKADT*LSANLFTIFNTMRSL 114
           LCV V  D     +LF +FN MRSL
Sbjct: 566 LCVIVDNDFQNGQSLFDVFNKMRSL 590


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 537 AHTDFINRNDYSLDGKLNLFKSPDTSVDFNARFKKFDTPFMK 662
           +H +F + ND+S   KLN   S  +       +K+   PF K
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,766
Number of Sequences: 5004
Number of extensions: 57686
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)