Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_P01
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0955 + 21215380-21215991,21216058-21216639                       27   9.4  

>04_03_0955 + 21215380-21215991,21216058-21216639
          Length = 397

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = +3

Query: 357 QREDYSFW-LSTPEPMPMAMTPIQARDVGTY---ISRCQVCEAPTRTIAVHSQSNTVPTC 524
           ++  + +W      P P    P+Q +DVGTY   I+           + ++ +   VP  
Sbjct: 179 KKTSFKYWKCQLLPPPPYLRDPMQMKDVGTYCMDIATHTWSPVGKWMLPLYGKIEYVPEL 238

Query: 525 PNGWEELWIGYSFLMHTAGADAS 593
                 LW G+S   H + AD S
Sbjct: 239 -----NLWFGFSDKNHLSAADLS 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,309
Number of Sequences: 37544
Number of extensions: 360602
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)