Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_O24
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 70 2e-12
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 66 2e-11
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323... 32 0.47
12_02_0911 + 24236374-24237582 30 1.9
10_02_0099 - 5295513-5296400 29 2.5
11_06_0200 + 21172282-21173430,21174023-21174128,21175098-211752... 28 5.7
08_02_1076 - 24151334-24152241,24152334-24152610 28 5.7
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 28 5.7
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395... 28 7.6
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 69.7 bits (163), Expect = 2e-12
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Frame = +1
Query: 82 DGGEWETVRKGAATSDK--PKMFAKD-SDIDAALVVKKLGEISAARGRKRTDRRAQLELL 252
DGG WE K + DK K F KD S+I +V KKL EI A+RG+K T R ++E L
Sbjct: 227 DGGAWE---KKISKKDKLMDKQFLKDPSEITWDIVDKKLKEIVASRGKKGTGRIERVEQL 283
Query: 253 HELRTVALQHNLGDALQLKLRAAIVAALFDYNPKVSDAMKPEYWSRLVENVDHMVTLLLA 432
L VA A +L++ +++A FD NP + M W + V N+ ++ +L
Sbjct: 284 TFLTRVAKT----PAQKLEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQ 339
Query: 433 HDDMILSEAI-TEENEQLVTPPY----HVRGCLLTALERLDD*IYQTAQ 564
+ ++++ ++ +E E Y HV G L+ LERLD +++ Q
Sbjct: 340 YPNIVVDTSVEPDEKETQKGADYDGQIHVTGDLVAFLERLDSEFFKSLQ 388
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 545 EFIKLLKECDPHSNEYVERLKEK 613
EF K L+ DP++ +YV+RL+++
Sbjct: 382 EFFKSLQCTDPYTKDYVQRLRDE 404
>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 66.5 bits (155), Expect = 2e-11
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Frame = +1
Query: 82 DGGEWETVRKGAATSDK--PKMFAKD-SDIDAALVVKKLGEISAARGRKRTDRRAQLELL 252
DGG+W VR DK K F KD S+I +V KKL EI A+RG+K T R ++E L
Sbjct: 541 DGGDW--VRH-TNKKDKLMDKQFLKDPSEITWDIVDKKLKEIVASRGKKGTGRVERVEQL 597
Query: 253 HELRTVALQHNLGDALQLKLRAAIVAALFDYNPKVSDAMKPEYWSRLVENVDHMVTLLLA 432
L VA A +L++ +++A FD NP + M W + V N+ ++ +L
Sbjct: 598 TFLTRVAKT----PAQKLEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQ 653
Query: 433 HDDMILSEAI-TEENEQLVTPPY----HVRGCLLTALERLDD*IYQTAQ 564
+ ++++ ++ +E E Y HV G L+ LERLD +++ Q
Sbjct: 654 YPNIVVDTSVEPDEKETQKGADYDGKIHVTGDLVAFLERLDSEFFKSLQ 702
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 545 EFIKLLKECDPHSNEYVERLKEK 613
EF K L+ DP++ +YV+RL+++
Sbjct: 696 EFFKSLQCTDPYTKDYVQRLRDE 718
>11_01_0421 +
3236798-3237144,3237356-3237441,3237741-3237895,
3237971-3238035,3238180-3238363,3238785-3239048,
3239141-3239224,3239727-3239984,3240214-3240472,
3240550-3240755,3240896-3240946,3241041-3241337
Length = 751
Score = 31.9 bits (69), Expect = 0.47
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +1
Query: 82 DGGEWETVRKGAATSDKPKMFAKDSDIDAALVVKK-LGEISAARGRKRTDRRAQLELLHE 258
+GG+W R+ + + + I ALV + +GE S A GR+R A +E HE
Sbjct: 44 EGGKWVAARRRGGAAGRGGRWP----ISPALVERSGVGEASPAAGRRRGGWEAVMETAHE 99
Query: 259 LRT-VALQHNLGDALQLKLRAAIVAAL--FDYNPKVSDAMKPEY 381
+ + HNL Q R I AA +Y VS A +Y
Sbjct: 100 VAIYIDRFHNLDLFQQGWYRLKISAAWEEDEYRAPVSPARVVQY 143
>12_02_0911 + 24236374-24237582
Length = 402
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 100 TVRKGAATSDKPKMFAKDSDIDAALVVKKL-GEISAARGRKR 222
T R + ++D+ + + + DIDAA L ++ ARGRKR
Sbjct: 29 TARVASPSTDRKRKASSEDDIDAAAAAAALTSPLAPARGRKR 70
>10_02_0099 - 5295513-5296400
Length = 295
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 307 KLRAAIVAALFDYNPKVSDAMKPEYWSRL 393
+L AI AL D+N + D + PE W RL
Sbjct: 23 QLVGAIYVALDDFNARERDTIPPELWRRL 51
>11_06_0200 +
21172282-21173430,21174023-21174128,21175098-21175219,
21175225-21175287
Length = 479
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 259 LRTVALQHNLGDALQLKLRAAIVAA-LFDYNPKVSDAMKPEYWSRLVENV 405
LR A +H+ D++ LKL I +FDY PKV++A + + E V
Sbjct: 417 LRAGAGKHSGNDSILLKLDEIIAKIKVFDYAPKVTNASADLFCENIREAV 466
>08_02_1076 - 24151334-24152241,24152334-24152610
Length = 394
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 112 GAATSDKPKMFAKDSDIDAALVVKKLGEISAARGRKRTDRRAQLELLHELRTVALQHNLG 291
GAA F + DAA+V + L E +AARGR Q+E+L A + G
Sbjct: 224 GAALEASGARFVWEVGADAAVVPEGLEERTAARGRVVRGWAPQMEILRHAAVGAFLTHCG 283
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = -2
Query: 292 HLGYVAKQQYVTHGAVQVEHDDQFVYDXXXXXXXXXXXLQVQHQCHY 152
H AKQ+++T G ++ H+ + Y ++ +H C Y
Sbjct: 317 HQNLKAKQRFLTIGTAKIAHEMEVFYHGRQNNMTTPVIMEEEHYCRY 363
>02_01_0541 -
3950336-3950353,3950660-3951061,3951174-3951431,
3951554-3951754,3951861-3952203,3952286-3952344,
3952757-3953082,3953283-3953745,3954180-3954794,
3955600-3955896
Length = 993
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 165 INVTILSKHFWFI-GGCGTFPNCFPFSTIICLITLAYFSSSVTSLFTPLSPALVS 4
+ +++++ WF+ G G +PN + T C + FS SV + P + L +
Sbjct: 577 VTLSLVTFIAWFLCGSLGAYPNSWVDETSNCFVFSLMFSISVVVIACPCALGLAT 631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,486
Number of Sequences: 37544
Number of extensions: 290524
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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