Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O24
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    90   1e-18
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    27   8.9  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    27   8.9  

>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
 Frame = +1

Query: 55  KISKRDQADDGGEWETVRKGAATSDKPKMFAKDSDIDAALVVKKLGEISAARGRKRTDRR 234
           ++ +  + DD  +W  V +  +       F    ++   +++KKL E+ +ARG++ TDR 
Sbjct: 268 RVKEAVEEDDDADWTPVNREKSVVH----FDPKEEVTHDVMIKKLNEVMSARGKRTTDRN 323

Query: 235 AQLELLHELRTVALQHNLGDALQLKLRAAIVAALFDYNPKVSDAMKPEYWSRLVENVDHM 414
             +  L +L  V+ +  LG  + +K+   I++ALF+ N K+SD M+ E +   ++ V+ +
Sbjct: 324 QHVANLRKLLEVSEEKELGLGINVKISFCIISALFELNAKISDHMEYETFMTTLQTVNSL 383

Query: 415 VTLLLAHDDMILSEAITEENEQLV--TPPYHVRGCLLTALERLD 540
           + LL+  D + LS    EE+E L   T  Y ++G +L A++RLD
Sbjct: 384 LDLLIGTDRVKLSVTYAEEDENLKDDTQEYRIQGSILIAVQRLD 427



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 545 EFIKLLKECDPHSNEYVERLK 607
           E  K+L+  D HSN+Y+E+LK
Sbjct: 429 ELAKILQNADCHSNDYIEKLK 449


>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
           protein F17C8.1 protein.
          Length = 1253

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 108 PNCFPFSTIICLITLAYFSSSVTSLF-TPLSPALVSF 1
           P  F  + +ICL+TL  FS+   + F TP++    SF
Sbjct: 124 PTSFLCTFLICLVTLLIFSAENQAAFMTPVASLATSF 160


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 561 SKNVIPILMNMLSD*KKKWRVLTYDRVCQ 647
           +KN+IP+  N LSD   KW+++  D  C+
Sbjct: 182 AKNLIPMDPNGLSDPYVKWKLIPEDSGCK 210


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 561 SKNVIPILMNMLSD*KKKWRVLTYDRVCQ 647
           +KN+IP+  N LSD   KW+++  D  C+
Sbjct: 182 AKNLIPMDPNGLSDPYVKWKLIPEDSGCK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,210
Number of Sequences: 27780
Number of extensions: 258693
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)