Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O23
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.29 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.50 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 232 PPIAVGTAGALPTPGLLEPPPDDDTAAL 149
           PP AV    A+PT  +LE  PD  T  L
Sbjct: 98  PPEAVSYNVAVPTKSILEKKPDVTTVEL 125


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 194 SWQCTCCTNSYWRTYTDVIE*LSSEPVGGVEQVQ 295
           S  CT    SY  T  DV+      PV GVE+ +
Sbjct: 172 SQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAE 205



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/56 (17%), Positives = 21/56 (37%)
 Frame = -2

Query: 395 ATSRHKFWTRHTSRTGFSQHSPGALLVPDATGFTALAPLPPRAHLTVIQ*RQCRSS 228
           A   + +W     +    + S    ++   +G  A +P P      +I+ +  R S
Sbjct: 323 AAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMS 378


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 295 LHLLHSPHGLT*QSFNDVSVGPPIAVGTA 209
           LH LH  HGL+  +    S GP  A   A
Sbjct: 137 LHGLHGLHGLSSSAPTGSSCGPGAAAAAA 165


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 232 PPIAVGTAGALPTPGLLEPPPD 167
           PP AV    A+PT  +LE  P+
Sbjct: 98  PPEAVSYNVAVPTKSILEKKPE 119


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = +2

Query: 176 WLQQPWSWQCTCC 214
           W Q PW W    C
Sbjct: 95  WQQYPWQWGLGIC 107


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 109 QSSCEMKLFWFP 74
           +S+C+M + WFP
Sbjct: 108 KSTCKMDIAWFP 119


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 206 TCCTNSYWRTYT 241
           TCCT  +W   T
Sbjct: 199 TCCTTXWWSXXT 210


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 109 QSSCEMKLFWFP 74
           +S+C+M + WFP
Sbjct: 108 KSTCKMDVAWFP 119


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 95  LTGRLHEHLQSYTRCSRTERCS 160
           L  R H+   + +R SR  RCS
Sbjct: 217 LRNRTHDFQHTSSRYSRERRCS 238


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 321 ERTRTVLTEPGPGGVP 368
           E  +T    PGP GVP
Sbjct: 323 ESMKTARENPGPPGVP 338


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 321 ERTRTVLTEPGPGGVP 368
           E  +T    PGP GVP
Sbjct: 323 ESMKTARENPGPPGVP 338


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 344 SQHSPGALLVPDATGFTALA 285
           S+H   ++L  D  GFTA++
Sbjct: 267 SRHENVSILYADIVGFTAIS 286


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 232 PPIAVGTAGALPTPGLLEPPPDDD 161
           PPI      A  T    E PPD D
Sbjct: 641 PPIMPRVQNATDTTNFDEYPPDSD 664


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 321 ERTRTVLTEPGPGGVP 368
           E  +T    PGP GVP
Sbjct: 262 ESMKTARENPGPPGVP 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,359
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)