Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O21
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   1.2  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   2.1  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    25   3.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   3.6  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   4.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   4.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   4.8  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.3  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    24   8.3  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 110 GIPRR--RRNGPHSEDASDNLQNNFSEI 33
           GIPR   +   PHS D ++N+Q  FS +
Sbjct: 420 GIPRNFCQTAPPHSRDITENMQRKFSSM 447


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 172 PSLQWPRPRLWLKENNH 222
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 95  RRNGPHSEDASDNLQNN 45
           R+ GPH E    NLQNN
Sbjct: 297 RKLGPHMEHVFTNLQNN 313


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 59  CRLRLRYGDRFGGAVESLLGIGESWPENERRSHK 160
           C LRL+      G +E LL   +S  E +  SHK
Sbjct: 308 CSLRLKELQNSNGELEKLLEAAQSSFEEQLESHK 341


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 257 YKHEKIHKKVNE*LFSFSQSRGLGHCS 177
           Y H K  KKV E L + + SR +  CS
Sbjct: 214 YFHSKAEKKVTEFLRNRNWSRSITECS 240


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 259 YINMRKYIKKLMNDYF 212
           ++N+R YI+K MN+ F
Sbjct: 373 FLNLRSYIRKSMNNVF 388


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 209 FSQSRGLGHCSDGWTST 159
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 218 IIH*LFYVFSHVYIITFFVSYIHIILDSY 304
           II   F+ FS   +I FFVSY +II DSY
Sbjct: 448 IIASAFFGFS--LLIVFFVSYNYII-DSY 473


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 188 GHCSDGWTSTYDCVSHSLANFLQFLEGIPRRRRNGPHSEDASDNLQNNFSE 36
           G   DG  ST+D       + L+ L  IPRR    P +    D+L  +F+E
Sbjct: 34  GVAGDGIFSTFDI------DELEVLAKIPRRIILSPRNSRFGDSLYTHFNE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,592
Number of Sequences: 5004
Number of extensions: 24568
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)