Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O21
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    29   0.85 
11_04_0047 + 12787845-12788004,12788297-12788940                       27   4.5  
06_01_1116 + 9197761-9199956                                           27   6.0  
11_01_0624 - 5021105-5022061                                           26   7.9  
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391     26   7.9  

>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 185 HCSDGWTSTYDCVSHSLANFLQFLEGIPRRRRNGPHSEDASDNLQNNFSEIHV*YSIN 12
           HCS G  ++   V+ +   FLQ L+  PRR +  PH    SD  + + S +   ++ N
Sbjct: 194 HCSSGCINSL--VAEARIKFLQLLDHPPRRDQPPPHLCLGSDRARTHPSSLSSLFTYN 249


>11_04_0047 + 12787845-12788004,12788297-12788940
          Length = 267

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 260 LYKHEKIHKKVNE*LFSFSQSRGLGHCSDGWTSTYDC 150
           L K+EK  K+++  L S   +  LG  S+  T+T DC
Sbjct: 211 LAKYEKEKKQMSNSLPSDGDNTNLGASSESMTATVDC 247


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 128 SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 223
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


>11_01_0624 - 5021105-5022061
          Length = 318

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 140 SLANFLQFLEGIPRRRRNGPHSEDASDNLQN 48
           S A F  FL+G+ RR R+     DAS  L++
Sbjct: 80  SAAKFTAFLDGLLRRLRSRRRPGDASPRLES 110


>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
          Length = 598

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 74  RYGDRFGGAVESLLGIGESWPENERRSHKCWS 169
           R+    GGA+ + L IG SWP     SH  W+
Sbjct: 135 RFSHLTGGAIVNSLTIGVSWPP----SHDLWN 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,681,685
Number of Sequences: 37544
Number of extensions: 158920
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)