Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_O18
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.1  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   2.0  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    26   6.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   7.9  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   7.9  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 630  DYITT**IHINKVKENK*NEILDYNKRY*TVFFFLEYHLYVYLQQENKVQSILNE 466
            +YIT    H  + +E K  EI  Y   +  V F LE H  +Y+  +  V++ L E
Sbjct: 1216 EYITYNWPHWLRKQEEKQREIWGYKILFLDVLFPLELHKVIYVDADQIVRADLQE 1270


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 515 RWYSRKKKTV*YLLL*SNISFYLFSFTLFICIYYV 619
           RWY+R++K++       N+S  L++F LF  + Y+
Sbjct: 113 RWYTRRRKSI------PNLSIKLYAFQLFRALAYL 141


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 300 IKIQTVIYENYIIYVIDYSNFALYVVHNKNN*DKIKFTQI 181
           +K+ T  Y  +++Y++    F +Y+V        +KF +I
Sbjct: 2   VKVPTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEI 41


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 402 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDGIQEKKKLFNI 551
           N+LE+  ++   SS+ H      SIY +L+F + +     ++  + L NI
Sbjct: 118 NVLEKLLLLQDYSSWTHGNSCKTSIYILLFFALSNTEKTRVRSLQILANI 167


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 14  SIRVAVSIMVEALRRLVVARTPAKLIQ 94
           ++RVA S+ V  + R   ARTP++L Q
Sbjct: 316 TVRVASSLAVRPVSRNAQARTPSRLEQ 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,978
Number of Sequences: 5004
Number of extensions: 47453
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)